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update for github workflows #146

update for github workflows

update for github workflows #146

Triggered via push August 29, 2023 14:44
Status Failure
Total duration 1h 12m 43s
Artifacts 1

check-bioc.yml

on: push
Matrix: build-check
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18 errors and 50 warnings
windows-latest (devel)
unable to load R code in package 'MSnbase'
windows-latest (devel)
unable to load R code in package 'MSnbase'
windows-latest (devel)
unable to load R code in package 'MSnbase'
windows-latest (devel)
processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics:
windows-latest (devel)
processing vignette 'msPurity-vignette.Rmd' failed with diagnostics:
windows-latest (devel)
Vignette re-building failed.
windows-latest (devel)
Failed to install 'msPurity' from local:
windows-latest (devel)
Process completed with exit code 1.
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
unable to load R code in package ‘MSnbase’
macOS-latest (devel)
--- re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ using rmarkdown
macOS-latest (devel)
processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics:
macOS-latest (devel)
processing vignette 'msPurity-vignette.Rmd' failed with diagnostics:
macOS-latest (devel)
Vignette re-building failed.
macOS-latest (devel)
Failed to install 'msPurity' from local:
macOS-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
unable to load R code in package ‘MSnbase’
macOS-latest (devel)
unable to load R code in package ‘MSnbase’
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/bioc/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/books/bin/windows/contrib/4.4:
windows-latest (devel)
this package has a non-empty 'configure.ucrt' file,
windows-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
windows-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
windows-latest (devel)
this package has a non-empty 'configure.win' file,
windows-latest (devel)
namespace 'MSnbase' is not available and has been replaced
windows-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/bioc/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/books/bin/windows/contrib/4.4:
windows-latest (devel)
namespace 'MSnbase' is not available and has been replaced
windows-latest (devel)
namespace 'MSnbase' is not available and has been replaced
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/bioc/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/books/bin/windows/contrib/4.4:
macOS-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (devel)
unable to access index for repository https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/bioc/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
namespace ‘MSnbase’ is not available and has been replaced
macOS-latest (devel)
namespace ‘MSnbase’ is not available and has been replaced
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/bioc/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
macOS-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
macOS-latest (devel)
‘dold’ may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (devel)
‘out’ may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/bioc/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.17/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.4:

Artifacts

Produced during runtime
Name Size
Linux-biocversion-devel-r-devel-results Expired
64.3 MB