remove lintr

.github/workflows/pr.yaml

@@ -170,64 +170,6 @@ jobs:
             flake8 $(cat ../workflow_artifacts/changed_repositories.list)
         fi
 
-  # lintr:
-  #   name: Lint R scripts
-  #   needs: setup
-  #   runs-on: ubuntu-latest
-  #   strategy:
-  #     matrix:
-  #       r-version: [4.4.0]
-  #   steps:
-  #   # checkout the repository to master
-  #   # and use it as the current working directory
-  #   - uses: actions/checkout@v2
-  #     with:
-  #       fetch-depth: 1
-  #   - uses: actions/download-artifact@v2
-  #     with:
-  #       name: Workflow artifacts
-  #       path: ../workflow_artifacts/
-  #   - uses: r-lib/actions/setup-r@v2
-  #     with:
-  #       r-version: ${{ matrix.r-version }}
-  #   - name: Cache R packages
-  #     uses: actions/cache@v2
-  #     with:
-  #       path: ${{ env.R_LIBS_USER }}
-  #       key: r_cache_1${{ matrix.r-version }}
-  #   - name: Install non-R lintr dependencies
-  #     run: sudo apt-get install libcurl4-openssl-dev
-  #   - name: Install lintr
-  #     run: |
-  #       install.packages('remotes')
-  #       remotes::install_cran("lintr", force=TRUE)
-  #     shell: Rscript {0}
-  #   - name: lintr
-  #     run: |
-  #       library(lintr)
-  #       linters <- with_defaults(line_length_linter = NULL, 
-  #                                object_name_linter = NULL,
-  #                                object_usage_linter = NULL,
-  #                                cyclocomp_linter(complexity_limit = 25))
-  #       con <- file("../workflow_artifacts/changed_repositories.list", "r")
-  #       status <- 0
-  #       while (TRUE) {
-  #         repo <- readLines(con, n = 1)
-  #         if (length(repo) == 0) {
-  #            break
-  #         }
-  #         lnt <- lint_dir(repo, relative_path=T, linters=linters)
-  #         if (length(lnt) > 0) {
-  #           status <- 1
-  #           for (l in lnt) {
-  #             rel_path <- paste(repo, l$filename, sep="/")
-  #             write(paste(paste(rel_path, l$line_number, l$column_number, sep=":"), l$message), stderr())
-  #           }
-  #         }
-  #       }
-  #       quit(status = status)
-  #     shell: Rscript {0}
-
   # Planemo test the changed repositories, each chunk creates an artifact
   # containing HTML and JSON reports for the executed tests
   test: