Program to take a HGVS-nomenclature variant and create a laymans sentence explaining what is occurring
The grammar importing function relies heavily on the grammar.py module code created by Mutalyzer
This package requires pyparsing and can be installed using pip:
git clone https://github.com/conmeehan/laymansHGVS
pip install laymansHGVS
This installs a simple command line script called explain_HGVS that takes a
single argument string containing a valid HGVS formatted variant and
explains it.
explain_HGVS --variant "Genome1(Gene1):c.25A>G"
>>> This is a subst found in Genome1 at position 25 where the reference has a A and the sample has a G