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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname BayesCPclust | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: A Bayesian Approach for Clustering Constant-Wise Change-Point Data | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5.0 | ||
| Requires: R-core >= 3.5.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-extraDistr | ||
| BuildRequires: R-CRAN-RcppAlgos | ||
| BuildRequires: R-stats | ||
| Requires: R-CRAN-extraDistr | ||
| Requires: R-CRAN-RcppAlgos | ||
| Requires: R-stats | ||
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| %description | ||
| A Gibbs sampler algorithm was developed to estimate change points in | ||
| constant-wise data sequences while performing clustering simultaneously. | ||
| The algorithm is described in da Cruz, A. C. and de Souza, C. P. E "A | ||
| Bayesian Approach for Clustering Constant-wise Change-point Data" | ||
| <doi:10.48550/arXiv.2305.17631>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,69 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname MEGB | ||
| %global packver 0.1 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Gradient Boosting for Longitudinal Data | ||
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| License: GPL-2 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-gbm | ||
| BuildRequires: R-CRAN-MASS | ||
| BuildRequires: R-CRAN-latex2exp | ||
| Requires: R-stats | ||
| Requires: R-CRAN-gbm | ||
| Requires: R-CRAN-MASS | ||
| Requires: R-CRAN-latex2exp | ||
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| %description | ||
| Gradient boosting is a powerful statistical learning method known for its | ||
| ability to model complex relationships between predictors and outcomes | ||
| while performing inherent variable selection. However, traditional | ||
| gradient boosting methods lack flexibility in handling longitudinal data | ||
| where within-subject correlations play a critical role. In this package, | ||
| we propose a novel approach Mixed Effect Gradient Boosting ('MEGB'), | ||
| designed specifically for high-dimensional longitudinal data. 'MEGB' | ||
| incorporates a flexible semi-parametric model that embeds random effects | ||
| within the gradient boosting framework, allowing it to account for | ||
| within-individual covariance over time. Additionally, the method | ||
| efficiently handles scenarios where the number of predictors greatly | ||
| exceeds the number of observations (p>>n) making it particularly suitable | ||
| for genomics data and other large-scale biomedical studies. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname MatTransMix | ||
| %global packver 0.1.18 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.18 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Clustering with Matrix Gaussian and Matrix Transformation Mixture Models | ||
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| License: GPL (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.0.0 | ||
| Requires: R-core >= 3.0.0 | ||
| BuildRequires: R-CRAN-mvtnorm | ||
| Requires: R-CRAN-mvtnorm | ||
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| %description | ||
| Provides matrix Gaussian mixture models, matrix transformation mixture | ||
| models and their model-based clustering results. The parsimonious models | ||
| of the mean matrices and variance covariance matrices are implemented with | ||
| a total of 196 variations. For more information, please check: Xuwen Zhu, | ||
| Shuchismita Sarkar, and Volodymyr Melnykov (2021), "MatTransMix: an R | ||
| package for matrix model-based clustering and parsimonious mixture | ||
| modeling", <doi:10.1007/s00357-021-09401-9>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
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| %build | ||
|
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||
| %install | ||
|
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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