adjusts input file paths

csbg · Mar 9, 2023 · 3c7d68a · 3c7d68a
1 parent 8852762
commit 3c7d68a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scatac/monocle_to_anndata.R b/scatac/monocle_to_anndata.R
@@ -1,10 +1,10 @@
 
 nb_rna <- 
   readRDS(
-    file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/rna_decontaminated.rds")
+    file = "data_generated/rna_decontaminated.rds")
 nb_rna_meta <- 
   readRDS(
-    file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/metadata.rds")
+    file = "data_generated/metadata.rds")
 
 # rna_integrated_monocle.rds
 # sce <- SingleCellExperiment(list(counts=counts))