Removing debugging print

cshenry · Feb 23, 2025 · 84317b7 · 84317b7
1 parent b569bdd
commit 84317b7
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/modelseedpy/core/msgapfill.py b/modelseedpy/core/msgapfill.py
@@ -542,7 +542,6 @@ def run_multi_gapfill(
         if gapfilling_mode == "Global":
             #Now we run simultaneous gapfilling on a combination of all our various gapfilled models
             print("Running global gapfilling!")
-            print("Reaction scores:",self.reaction_scores)
             full_solution = self.run_global_gapfilling(
                 medias=test_output["medias"],
                 targets=test_output["targets"],

diff --git a/modelseedpy/core/msgrowthphenotypes.py b/modelseedpy/core/msgrowthphenotypes.py
@@ -536,7 +536,7 @@ def simulate_phenotypes(
         # Running simulations
         gapfilling_solutions = {}
         totalcount = 0
-        datahash = {}
+        datahash = {"summary": {}}
         for pheno in self.phenotypes:
             result = pheno.simulate(
                 modelutl,
@@ -599,6 +599,13 @@ def simulate_phenotypes(
             summary["Count"][0] = None
         else:
             summary["Count"][0] = summary["Count"][0] / totalcount
+        datahash["summary"]["accuracy"] = summary["Count"][0]
+        datahash["summary"]["CP"] = summary["Count"][1]
+        datahash["summary"]["CN"] = summary["Count"][2]
+        datahash["summary"]["FP"] = summary["Count"][3]
+        datahash["summary"]["FN"] = summary["Count"][4]
+        datahash["summary"]["P"] = summary["Count"][5]
+        datahash["summary"]["N"] = summary["Count"][6]
         sdf = pd.DataFrame(summary)
         df = pd.DataFrame(data)
         self.adjust_phenotype_calls(df)