SQA: add user manual link to syntax index, disable theory manual chec…

…k and add reason

Refs idaholab#73

doc/sqa_reports.yml

@@ -25,7 +25,8 @@ Documents:
     software_library_list: sqa/malamute_sll.md
     communication_and_contact_information: sqa/malamute_cci.md
     software_coding_standards: sqa/malamute_scs.md
-    log_default: WARNING
+    user_manual: ${ROOT_DIR}/doc/content/syntax/index.md
+    log_theory_manual: NONE   # all theory is contained within example, benchmark, or design docs
     show_warning: false
     working_dirs:
         - ${ROOT_DIR}/doc/content