Use same CytoDataFrame in multiple Jupyter cells (#131) #256
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| # used for running tests | |
| name: tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| pre_commit_checks: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| # checks out the repo | |
| - uses: actions/checkout@v4 | |
| - name: Python setup | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Setup for poetry | |
| run: | | |
| python -m pip install poetry | |
| - name: Simulate version tag for cosmicqc install compatibility | |
| run: | | |
| poetry version 99.0.0 | |
| - name: Install environment | |
| run: poetry install --no-interaction --no-ansi | |
| # run pre-commit | |
| - uses: pre-commit/[email protected] | |
| id: pre_commit | |
| # run pre-commit ci lite for automated fixes | |
| - uses: pre-commit-ci/[email protected] | |
| if: ${{ !cancelled() && steps.pre_commit.outcome == 'failure' }} | |
| run_tests: | |
| strategy: | |
| matrix: | |
| python_version: ["3.10", "3.11", "3.12", "3.13"] | |
| os: [ubuntu-24.04, macos-14] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| OS: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Python setup | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Setup for poetry | |
| run: | | |
| python -m pip install poetry | |
| - name: Simulate version tag for cosmicqc install compatibility | |
| run: | | |
| poetry version 99.0.0 | |
| - name: Install environment | |
| run: poetry install --no-interaction --no-ansi | |
| - name: Run pytest (non-3.13) | |
| if: ${{ matrix.python_version != '3.13' }} | |
| # run all tests | |
| run: poetry run pytest | |
| - name: Run pytest (py 3.13) | |
| if: ${{ matrix.python_version == '3.13' }} | |
| # run all tests except integration tests with cosmicqc | |
| run: poetry run pytest --ignore=tests/test_project_integration.py | |
| - name: Reset version to 0.0.0 | |
| run: | | |
| poetry version 0.0.0 |