Skip to content

v0.2
Compare
Choose a tag to compare
@kgaonkar6 kgaonkar6 released this 12 May 14:57
· 525 commits to master since this release
v0.2
da156b2
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Description of changes

  • This PR adds singleSample run for standardization, red flag filtering using FusionAnnotator and expression based filtering. In addition to the FusionAnnotator annotations the sample calls will also be annotated using the genereferencelist.txt and fusionreferencelist.txt.

  • In addition there are functions getPfamDomain() and plotBreakpoint() that add pfam domain information as well as plot breakpoints as shown in vignette.

  • In inst/extdata/ test arriba,starfusion and rsem files are availble. We also added RDS files from biomart+pfam dataframe and exons dataframe for domain annotation.

  • plotSummary() has plots for retained kinase domains instead of annotation from legacy kinase gene list.

  • singleSampleRun.Rmd vignette has been added to display use of annoFuse for sample level analysis.

What does the changes add to package?

Domain level information and ability to run only per sample runs.

Assets 2
Loading