Update repository #3

	name: Update repository

	on:
	schedule:
	- cron: '51 6 * * *'
	workflow_dispatch:

	jobs:
	update-repo:
	runs-on: ubuntu-latest
	steps:
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '^3.9'

	- name: Configure git environment
	run: \|
	git config --global user.email "[email protected]"
	git config --global user.name "DANDI Bot"

	- name: Check out repository
	uses: actions/checkout@v4

	- name: Get dandisets-linkml-status-tools submodule content
	run: git submodule update --init --recursive --remote

	- name: Commit of the update of submodule if there is a change
	run: \|
	if git diff --quiet -- "./tools"; then
	echo "There is no change in the dandisets-linkml-status-tools submodule."
	else
	git add ./tools
	git commit -m "Update dandisets-linkml-status-tools submodule"
	git push
	echo "The dandisets-linkml-status-tools submodule has been updated."
	fi
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install datalad
	python -m pip install con-duct
	python -m pip install ./tools

	# Update this repo with the latest validation reports
	- name: datalad run dandisets-linkml-status with con-duct
	run: \|
	datalad run -m "Get latest validation reports with a summary" duct dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO
	git push
	echo "The repository has been updated with the latest validation reports."

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