Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Major refactor! Remove additional variation of the "ephys" modules! Support using SpikeInterface for spike sorting #201

Draft
wants to merge 186 commits into
base: main
Choose a base branch
from

Commits on Nov 30, 2022

  1. Configuration menu
    Copy the full SHA
    ec9fcf3 View commit details
    Browse the repository at this point in the history
  2. Merge branch 'main' into modular_clustering

    Thinh Nguyen committed Nov 30, 2022
    Configuration menu
    Copy the full SHA
    c0d139f View commit details
    Browse the repository at this point in the history

Commits on Dec 6, 2022

  1. Merge branch 'main' into modular_clustering

    Thinh Nguyen committed Dec 6, 2022
    Configuration menu
    Copy the full SHA
    c88f0ef View commit details
    Browse the repository at this point in the history

Commits on Jan 5, 2023

  1. Merge branch 'main' into modular_clustering

    Thinh Nguyen committed Jan 5, 2023
    Configuration menu
    Copy the full SHA
    59c36f3 View commit details
    Browse the repository at this point in the history
  2. Update ecephys_spike_sorting.py

    Thinh Nguyen committed Jan 5, 2023
    Configuration menu
    Copy the full SHA
    f572438 View commit details
    Browse the repository at this point in the history
  3. Update ecephys_spike_sorting.py

    Thinh Nguyen committed Jan 5, 2023
    Configuration menu
    Copy the full SHA
    edf1578 View commit details
    Browse the repository at this point in the history
  4. fix typo

    Thinh Nguyen committed Jan 5, 2023
    Configuration menu
    Copy the full SHA
    7e267c5 View commit details
    Browse the repository at this point in the history

Commits on Jan 6, 2023

  1. Update ecephys_spike_sorting.py

    Thinh Nguyen committed Jan 6, 2023
    Configuration menu
    Copy the full SHA
    6e7ddf1 View commit details
    Browse the repository at this point in the history
  2. improve log messages

    Thinh Nguyen committed Jan 6, 2023
    Configuration menu
    Copy the full SHA
    7fd9bb4 View commit details
    Browse the repository at this point in the history
  3. fix key_source

    Thinh Nguyen committed Jan 6, 2023
    Configuration menu
    Copy the full SHA
    26a56e7 View commit details
    Browse the repository at this point in the history

Commits on Jan 18, 2023

  1. Update ecephys_spike_sorting.py

    Thinh Nguyen committed Jan 18, 2023
    Configuration menu
    Copy the full SHA
    654bc52 View commit details
    Browse the repository at this point in the history

Commits on Jan 19, 2023

  1. bugfix

    Thinh Nguyen committed Jan 19, 2023
    Configuration menu
    Copy the full SHA
    f75e14f View commit details
    Browse the repository at this point in the history
  2. bugfix

    Thinh Nguyen committed Jan 19, 2023
    Configuration menu
    Copy the full SHA
    a32d1d2 View commit details
    Browse the repository at this point in the history

Commits on Jan 20, 2023

  1. Merge branch 'main' into modular_clustering

    Thinh Nguyen committed Jan 20, 2023
    Configuration menu
    Copy the full SHA
    4723bba View commit details
    Browse the repository at this point in the history
  2. Merge branch 'main' into modular_clustering

    Thinh Nguyen committed Jan 20, 2023
    Configuration menu
    Copy the full SHA
    ef0ad94 View commit details
    Browse the repository at this point in the history
  3. Update kilosort_triggering.py

    Thinh Nguyen committed Jan 20, 2023
    Configuration menu
    Copy the full SHA
    3bea775 View commit details
    Browse the repository at this point in the history

Commits on Jan 23, 2023

  1. fix docstring

    Thinh Nguyen committed Jan 23, 2023
    Configuration menu
    Copy the full SHA
    4f955b3 View commit details
    Browse the repository at this point in the history
  2. added description

    Thinh Nguyen committed Jan 23, 2023
    Configuration menu
    Copy the full SHA
    53854d0 View commit details
    Browse the repository at this point in the history

Commits on Jan 24, 2023

  1. Merge branch 'main' into modular_clustering

    Thinh Nguyen committed Jan 24, 2023
    Configuration menu
    Copy the full SHA
    3e9fc4b View commit details
    Browse the repository at this point in the history

Commits on Jan 25, 2023

  1. refactor _supported_kilosort_versions

    Thinh Nguyen committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    fe9955c View commit details
    Browse the repository at this point in the history
  2. remove unused imports

    Thinh Nguyen committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    aea325d View commit details
    Browse the repository at this point in the history

Commits on Feb 2, 2023

  1. Configuration menu
    Copy the full SHA
    4f648cc View commit details
    Browse the repository at this point in the history

Commits on Feb 3, 2023

  1. Configuration menu
    Copy the full SHA
    60091ac View commit details
    Browse the repository at this point in the history
  2. edit typos

    sidhulyalkar committed Feb 3, 2023
    Configuration menu
    Copy the full SHA
    bca5fa9 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    1c4b0b5 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    56c9941 View commit details
    Browse the repository at this point in the history
  5. bugfix

    sidhulyalkar committed Feb 3, 2023
    Configuration menu
    Copy the full SHA
    ce14098 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    7c836f1 View commit details
    Browse the repository at this point in the history
  7. bugfix

    sidhulyalkar committed Feb 3, 2023
    Configuration menu
    Copy the full SHA
    dd63664 View commit details
    Browse the repository at this point in the history

Commits on Feb 4, 2023

  1. update initial comment

    sidhulyalkar committed Feb 4, 2023
    Configuration menu
    Copy the full SHA
    54888ed View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    50a4f6c View commit details
    Browse the repository at this point in the history

Commits on Feb 9, 2023

  1. Configuration menu
    Copy the full SHA
    f804233 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    8e1b73d View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    7520735 View commit details
    Browse the repository at this point in the history

Commits on Feb 11, 2023

  1. Configuration menu
    Copy the full SHA
    f0b7497 View commit details
    Browse the repository at this point in the history

Commits on Feb 13, 2023

  1. sglx testing progress

    sidhulyalkar committed Feb 13, 2023
    Configuration menu
    Copy the full SHA
    13fe31c View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2023

  1. Configuration menu
    Copy the full SHA
    d41c7f3 View commit details
    Browse the repository at this point in the history

Commits on Feb 18, 2023

  1. Configuration menu
    Copy the full SHA
    109a71a View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    1febd7e View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2023

  1. Configuration menu
    Copy the full SHA
    a478e06 View commit details
    Browse the repository at this point in the history

Commits on Feb 22, 2023

  1. waveform extraction wip

    sidhulyalkar committed Feb 22, 2023
    Configuration menu
    Copy the full SHA
    634761d View commit details
    Browse the repository at this point in the history

Commits on Feb 23, 2023

  1. Configuration menu
    Copy the full SHA
    ff0dfee View commit details
    Browse the repository at this point in the history
  2. adjust post processing

    sidhulyalkar committed Feb 23, 2023
    Configuration menu
    Copy the full SHA
    cb31229 View commit details
    Browse the repository at this point in the history

Commits on Mar 6, 2023

  1. Configuration menu
    Copy the full SHA
    6098421 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2023

  1. Configuration menu
    Copy the full SHA
    6006464 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    c050875 View commit details
    Browse the repository at this point in the history
  3. preprocessing changes

    sidhulyalkar committed Mar 8, 2023
    Configuration menu
    Copy the full SHA
    4ea56c0 View commit details
    Browse the repository at this point in the history

Commits on May 15, 2023

  1. Configuration menu
    Copy the full SHA
    1e74457 View commit details
    Browse the repository at this point in the history
  2. Update requirements.txt

    sidhulyalkar authored May 15, 2023
    Configuration menu
    Copy the full SHA
    0a87579 View commit details
    Browse the repository at this point in the history

Commits on Jun 13, 2023

  1. Configuration menu
    Copy the full SHA
    fb71cea View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2023

  1. Configuration menu
    Copy the full SHA
    22f1f65 View commit details
    Browse the repository at this point in the history

Commits on Aug 3, 2023

  1. Configuration menu
    Copy the full SHA
    5a0f624 View commit details
    Browse the repository at this point in the history

Commits on Oct 10, 2023

  1. Configuration menu
    Copy the full SHA
    1a46369 View commit details
    Browse the repository at this point in the history

Commits on Oct 11, 2023

  1. Configuration menu
    Copy the full SHA
    b62f162 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    849b576 View commit details
    Browse the repository at this point in the history

Commits on Oct 13, 2023

  1. Configuration menu
    Copy the full SHA
    7836a8b View commit details
    Browse the repository at this point in the history

Commits on Dec 14, 2023

  1. Configuration menu
    Copy the full SHA
    6bee166 View commit details
    Browse the repository at this point in the history

Commits on Dec 15, 2023

  1. create preprocessing.py

    JaerongA committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    9ae6b44 View commit details
    Browse the repository at this point in the history
  2. add SI_SORTERS , SI_READERS

    JaerongA committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    9d5eee6 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    1fceb90 View commit details
    Browse the repository at this point in the history

Commits on Dec 20, 2023

  1. Configuration menu
    Copy the full SHA
    df8ed74 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    2ed337b View commit details
    Browse the repository at this point in the history

Commits on Jan 3, 2024

  1. Configuration menu
    Copy the full SHA
    f6e3e46 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    e1c0d68 View commit details
    Browse the repository at this point in the history
  3. fix: 🐛 fix path & typo

    JaerongA committed Jan 3, 2024
    Configuration menu
    Copy the full SHA
    653e7e8 View commit details
    Browse the repository at this point in the history

Commits on Jan 5, 2024

  1. code review

    ttngu207 authored Jan 5, 2024
    Configuration menu
    Copy the full SHA
    8c25bd2 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    1084aae View commit details
    Browse the repository at this point in the history

Commits on Feb 1, 2024

  1. Configuration menu
    Copy the full SHA
    90d1ba4 View commit details
    Browse the repository at this point in the history

Commits on Feb 6, 2024

  1. Configuration menu
    Copy the full SHA
    cacefac View commit details
    Browse the repository at this point in the history

Commits on Feb 7, 2024

  1. Configuration menu
    Copy the full SHA
    f98e1ed View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    7a060ef View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    6daf0c5 View commit details
    Browse the repository at this point in the history
  4. extract all waveforms

    JaerongA committed Feb 7, 2024
    Configuration menu
    Copy the full SHA
    e41ff1d View commit details
    Browse the repository at this point in the history

Commits on Feb 8, 2024

  1. Configuration menu
    Copy the full SHA
    e8d9854 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    00b82f8 View commit details
    Browse the repository at this point in the history

Commits on Feb 12, 2024

  1. update WaveformSet ingestion

    JaerongA committed Feb 12, 2024
    Configuration menu
    Copy the full SHA
    b01c36c View commit details
    Browse the repository at this point in the history

Commits on Feb 13, 2024

  1. Update element_array_ephys/ephys_no_curation.py

    Co-authored-by: Kushal Bakshi <[email protected]>
    JaerongA and kushalbakshi authored Feb 13, 2024
    Configuration menu
    Copy the full SHA
    853b66f View commit details
    Browse the repository at this point in the history
  2. Update element_array_ephys/ephys_no_curation.py

    Co-authored-by: Kushal Bakshi <[email protected]>
    JaerongA and kushalbakshi authored Feb 13, 2024
    Configuration menu
    Copy the full SHA
    67ebf4e View commit details
    Browse the repository at this point in the history
  3. Update element_array_ephys/ephys_no_curation.py

    Co-authored-by: Kushal Bakshi <[email protected]>
    JaerongA and kushalbakshi authored Feb 13, 2024
    Configuration menu
    Copy the full SHA
    5fe6043 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    ac08163 View commit details
    Browse the repository at this point in the history
  5. Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…

    … datajoint-spikeinterface
    JaerongA committed Feb 13, 2024
    Configuration menu
    Copy the full SHA
    545aa92 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    e95331c View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    be5135e View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2024

  1. Configuration menu
    Copy the full SHA
    4b6fc0e View commit details
    Browse the repository at this point in the history

Commits on Feb 16, 2024

  1. Configuration menu
    Copy the full SHA
    4802511 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    bca67b3 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    1faa8f2 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    58f3a44 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    4fcea51 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    4f0e020 View commit details
    Browse the repository at this point in the history
  7. set recording channel info

    JaerongA committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    83e7a16 View commit details
    Browse the repository at this point in the history
  8. fix loading preprocessor

    JaerongA committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    1d18a39 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    b0a863f View commit details
    Browse the repository at this point in the history

Commits on Feb 19, 2024

  1. Configuration menu
    Copy the full SHA
    7d28351 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    95f5286 View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2024

  1. Configuration menu
    Copy the full SHA
    a7ebb9a View commit details
    Browse the repository at this point in the history

Commits on Feb 21, 2024

  1. Configuration menu
    Copy the full SHA
    134ff54 View commit details
    Browse the repository at this point in the history

Commits on Feb 27, 2024

  1. Configuration menu
    Copy the full SHA
    7972426 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    ed11526 View commit details
    Browse the repository at this point in the history

Commits on Feb 29, 2024

  1. Configuration menu
    Copy the full SHA
    bab86b7 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    0898ce5 View commit details
    Browse the repository at this point in the history

Commits on Mar 1, 2024

  1. Configuration menu
    Copy the full SHA
    727af24 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    1df41ea View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    417219f View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    f70ae4e View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    0ccbec9 View commit details
    Browse the repository at this point in the history
  6. improve try except logic

    JaerongA committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    86bb8d7 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    673faed View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    8ab4c58 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    226142b View commit details
    Browse the repository at this point in the history

Commits on Mar 5, 2024

  1. Configuration menu
    Copy the full SHA
    ea39839 View commit details
    Browse the repository at this point in the history
  2. Update element_array_ephys/ephys_no_curation.py

    Co-authored-by: Thinh Nguyen <[email protected]>
    JaerongA and ttngu207 authored Mar 5, 2024
    Configuration menu
    Copy the full SHA
    5bfe201 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    1d80584 View commit details
    Browse the repository at this point in the history

Commits on Mar 7, 2024

  1. Configuration menu
    Copy the full SHA
    88ce139 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2024

  1. Configuration menu
    Copy the full SHA
    7eaefa4 View commit details
    Browse the repository at this point in the history
  2. Merge pull request datajoint#179 from JaerongA/datajoint-spikeinterface

    SpikeInterface integration (WIP)
    Thinh Nguyen authored Mar 8, 2024
    Configuration menu
    Copy the full SHA
    90b81e3 View commit details
    Browse the repository at this point in the history

Commits on Mar 11, 2024

  1. Configuration menu
    Copy the full SHA
    d47be56 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    8dfc858 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    6e20a11 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    8d04e10 View commit details
    Browse the repository at this point in the history

Commits on Mar 12, 2024

  1. Configuration menu
    Copy the full SHA
    37a35d3 View commit details
    Browse the repository at this point in the history
  2. fix acq_software name

    JaerongA committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    bb39194 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    528fcf9 View commit details
    Browse the repository at this point in the history
  4. feat: 🚑 make all secondary attributes nullable in QualityMetrics

    some sorters don't output values expected by the table
    JaerongA committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    01ff816 View commit details
    Browse the repository at this point in the history
  5. Merge pull request datajoint#184 from JaerongA/datajoint-spikeinterface

    Fix & cleanup ephys_no_curation.py & si_spike_sorting.py
    Thinh Nguyen authored Mar 12, 2024
    Configuration menu
    Copy the full SHA
    cd65539 View commit details
    Browse the repository at this point in the history

Commits on Apr 4, 2024

  1. Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…

    … datajoint-spikeinterface
    ttngu207 committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    aff15bf View commit details
    Browse the repository at this point in the history

Commits on Apr 17, 2024

  1. Configuration menu
    Copy the full SHA
    67a1ffc View commit details
    Browse the repository at this point in the history

Commits on Apr 26, 2024

  1. Configuration menu
    Copy the full SHA
    d44dbaa View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…

    … datajoint-spikeinterface
    ttngu207 committed Apr 26, 2024
    Configuration menu
    Copy the full SHA
    1819cbc View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    d86928b View commit details
    Browse the repository at this point in the history
  4. Merge pull request datajoint#186 from ttngu207/datajoint-spikeinterface

    Pull from `main` - minor bugfix
    MilagrosMarin authored Apr 26, 2024
    Configuration menu
    Copy the full SHA
    6a6e7b7 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    f8ffd77 View commit details
    Browse the repository at this point in the history
  6. chore: cleanup init

    ttngu207 committed Apr 26, 2024
    Configuration menu
    Copy the full SHA
    7309082 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    d778b1e View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    015341c View commit details
    Browse the repository at this point in the history

Commits on Apr 29, 2024

  1. Configuration menu
    Copy the full SHA
    05ccfdb View commit details
    Browse the repository at this point in the history
  2. Merge pull request datajoint#187 from ttngu207/datajoint-spikeinterface

    update channel-electrode mapping & test spikeglx with spikeinterface
    MilagrosMarin authored Apr 29, 2024
    Configuration menu
    Copy the full SHA
    c819d19 View commit details
    Browse the repository at this point in the history

Commits on May 7, 2024

  1. Configuration menu
    Copy the full SHA
    93895a9 View commit details
    Browse the repository at this point in the history

Commits on May 8, 2024

  1. Update si_spike_sorting.py

    ttngu207 committed May 8, 2024
    Configuration menu
    Copy the full SHA
    bd3bb8e View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    c8882c6 View commit details
    Browse the repository at this point in the history

Commits on May 9, 2024

  1. Configuration menu
    Copy the full SHA
    403d1df View commit details
    Browse the repository at this point in the history

Commits on May 14, 2024

  1. Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…

    … datajoint-spikeinterface
    ttngu207 committed May 14, 2024
    Configuration menu
    Copy the full SHA
    bdf2b9f View commit details
    Browse the repository at this point in the history

Commits on May 24, 2024

  1. Configuration menu
    Copy the full SHA
    c934e67 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    3666cda View commit details
    Browse the repository at this point in the history
  3. format: black formatting

    ttngu207 committed May 24, 2024
    Configuration menu
    Copy the full SHA
    06a3f70 View commit details
    Browse the repository at this point in the history
  4. chore: code clean up

    ttngu207 committed May 24, 2024
    Configuration menu
    Copy the full SHA
    07a09f6 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    3fcf542 View commit details
    Browse the repository at this point in the history

Commits on May 28, 2024

  1. Configuration menu
    Copy the full SHA
    76dfc94 View commit details
    Browse the repository at this point in the history
  2. update: bump version

    ttngu207 committed May 28, 2024
    Configuration menu
    Copy the full SHA
    9094754 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    51e2ced View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    2a4b166 View commit details
    Browse the repository at this point in the history
  5. chore: minor code cleanup

    ttngu207 committed May 28, 2024
    Configuration menu
    Copy the full SHA
    0afb452 View commit details
    Browse the repository at this point in the history
  6. fix: merge fix & formatting

    ttngu207 committed May 28, 2024
    Configuration menu
    Copy the full SHA
    e8f445c View commit details
    Browse the repository at this point in the history
  7. fix: calling _run_sorter()

    ttngu207 committed May 28, 2024
    Configuration menu
    Copy the full SHA
    6155f13 View commit details
    Browse the repository at this point in the history

Commits on May 29, 2024

  1. Configuration menu
    Copy the full SHA
    f6a52d9 View commit details
    Browse the repository at this point in the history
  2. Merge pull request datajoint#191 from ttngu207/dev_spikeinterface_v101

    code cleanup + bugfix
    ttngu207 authored May 29, 2024
    Configuration menu
    Copy the full SHA
    92547d7 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    1ff92dd View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    b459709 View commit details
    Browse the repository at this point in the history
  5. Merge pull request datajoint#192 from ttngu207/dev_spikeinterface_v101

    fix: use relative path for phy output
    MilagrosMarin authored May 29, 2024
    Configuration menu
    Copy the full SHA
    e497a15 View commit details
    Browse the repository at this point in the history

Commits on Jun 3, 2024

  1. feat: replace output_folder with folder when calling run_sorter

    …, use default value for `peak_sign`
    ttngu207 committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    1a1b18f View commit details
    Browse the repository at this point in the history

Commits on Jun 4, 2024

  1. Merge pull request datajoint#193 from ttngu207/dev_spikeinterface_v101

    feat: replace `output_folder` with `folder` when calling `run_sorter`, use default value for `peak_sign`
    kushalbakshi authored Jun 4, 2024
    Configuration menu
    Copy the full SHA
    212a54f View commit details
    Browse the repository at this point in the history

Commits on Jun 5, 2024

  1. Configuration menu
    Copy the full SHA
    4e645eb View commit details
    Browse the repository at this point in the history
  2. Merge pull request datajoint#194 from ttngu207/dev_spikeinterface_v101

    fix: remove `job_kwargs` for sparsity calculation - memory error in linux container
    ttngu207 authored Jun 5, 2024
    Configuration menu
    Copy the full SHA
    82d73c9 View commit details
    Browse the repository at this point in the history

Commits on Jul 5, 2024

  1. Configuration menu
    Copy the full SHA
    38fdfb2 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    a4a8380 View commit details
    Browse the repository at this point in the history
  3. Merge pull request datajoint#195 from ttngu207/dev_spikeinterface_v101

    feat: separate `export` (phy and report) into a separate table
    ttngu207 authored Jul 5, 2024
    Configuration menu
    Copy the full SHA
    5a31632 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    1f05998 View commit details
    Browse the repository at this point in the history
  5. Merge pull request datajoint#196 from ttngu207/datajoint-spikeinterface

    fix: `spikes` object no longer available from `ComputeSpikeLocations`…
    ttngu207 authored Jul 5, 2024
    Configuration menu
    Copy the full SHA
    a22561a View commit details
    Browse the repository at this point in the history

Commits on Jul 6, 2024

  1. chore: code cleanup

    ttngu207 committed Jul 6, 2024
    Configuration menu
    Copy the full SHA
    7cd8ac8 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    c87e493 View commit details
    Browse the repository at this point in the history
  3. Merge pull request datajoint#197 from ttngu207/datajoint-spikeinterface

    fix: recording_extractor_full_dict is deprecated
    ttngu207 authored Jul 6, 2024
    Configuration menu
    Copy the full SHA
    dcfd880 View commit details
    Browse the repository at this point in the history

Commits on Jul 30, 2024

  1. Configuration menu
    Copy the full SHA
    097d9bb View commit details
    Browse the repository at this point in the history

Commits on Aug 15, 2024

  1. Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…

    … datajoint-spikeinterface
    ttngu207 committed Aug 15, 2024
    Configuration menu
    Copy the full SHA
    6aca235 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    b6f131b View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    84c38d1 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    6b14486 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    c2f2a79 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    726a2bb View commit details
    Browse the repository at this point in the history

Commits on Aug 16, 2024

  1. Configuration menu
    Copy the full SHA
    5dc5953 View commit details
    Browse the repository at this point in the history

Commits on Sep 10, 2024

  1. Configuration menu
    Copy the full SHA
    ccd23fc View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    0eef1cb View commit details
    Browse the repository at this point in the history
  3. chore: clean up diagrams

    ttngu207 committed Sep 10, 2024
    Configuration menu
    Copy the full SHA
    c2bd5ad View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2024

  1. Configuration menu
    Copy the full SHA
    4971108 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    a975353 View commit details
    Browse the repository at this point in the history
  3. format: black

    ttngu207 committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    63df4cd View commit details
    Browse the repository at this point in the history

Commits on Sep 20, 2024

  1. Configuration menu
    Copy the full SHA
    dc8bac1 View commit details
    Browse the repository at this point in the history