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Major refactor! Remove additional variation of the "ephys" modules! Support using SpikeInterface for spike sorting #201
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Commits on Nov 30, 2022
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first prototype in separating
Clustering
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Merge branch 'main' into modular_clustering
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Update ecephys_spike_sorting.py
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Update ecephys_spike_sorting.py
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Update ecephys_spike_sorting.py
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refactor
_supported_kilosort_versions
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Merge branch 'modular_spikeinterface' of https://github.com/sidhulyal…
…kar/element-array-ephys into modular_spikeinterface
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Merge branch 'modular_spikeinterface' of https://github.com/sidhulyal…
…kar/element-array-ephys into si
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Update element_array_ephys/ephys_no_curation.py
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Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…
… datajoint-spikeinterface
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refactor: 🔥 remove & get_neuropixels_channel2electrode_map and genera…
…te_electrode_config
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Update element_array_ephys/ephys_no_curation.py
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Merge pull request datajoint#179 from JaerongA/datajoint-spikeinterface
SpikeInterface integration (WIP)
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Merge branch 'datajoint-spikeinterface' of https://github.com/Jaerong…
…A/element-array-ephys into datajoint-spikeinterface
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feat: 🚑 make all secondary attributes nullable in QualityMetrics
some sorters don't output values expected by the table
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Merge pull request datajoint#184 from JaerongA/datajoint-spikeinterface
Fix & cleanup ephys_no_curation.py & si_spike_sorting.py
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Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…
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Merge pull request datajoint#186 from ttngu207/datajoint-spikeinterface
Pull from `main` - minor bugfix
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Merge pull request datajoint#187 from ttngu207/datajoint-spikeinterface
update channel-electrode mapping & test spikeglx with spikeinterface
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Merge branch 'datajoint-spikeinterface' of https://github.com/datajoi…
…nt/element-array-ephys into datajoint-spikeinterface
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update: update requirements to install
SpikeInterface
from github (……latest version)
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Commits on May 28, 2024
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Merge pull request datajoint#190 from ttngu207/dev_spikeinterface_v101
Dev spikeinterface v101
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Commits on May 29, 2024
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Merge pull request datajoint#191 from ttngu207/dev_spikeinterface_v101
code cleanup + bugfix
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Merge pull request datajoint#192 from ttngu207/dev_spikeinterface_v101
fix: use relative path for phy output
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Commits on Jun 3, 2024
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feat: replace
output_folder
withfolder
when callingrun_sorter
……, use default value for `peak_sign`
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Merge pull request datajoint#193 from ttngu207/dev_spikeinterface_v101
feat: replace `output_folder` with `folder` when calling `run_sorter`, use default value for `peak_sign`
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Merge pull request datajoint#194 from ttngu207/dev_spikeinterface_v101
fix: remove `job_kwargs` for sparsity calculation - memory error in linux container
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Merge pull request datajoint#195 from ttngu207/dev_spikeinterface_v101
feat: separate `export` (phy and report) into a separate table
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Merge pull request datajoint#196 from ttngu207/datajoint-spikeinterface
fix: `spikes` object no longer available from `ComputeSpikeLocations`…
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Commits on Jul 6, 2024
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Merge pull request datajoint#197 from ttngu207/datajoint-spikeinterface
fix: recording_extractor_full_dict is deprecated
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Commits on Jul 30, 2024
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Merge remote-tracking branch 'upstream/datajoint-spikeinterface' into…
… datajoint-spikeinterface
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Commits on Sep 10, 2024
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