fix: remove bsb-nest dependency

dbbs-lab · Aug 14, 2024 · 7e32d4d · 7e32d4d
1 parent fa163c8
commit 7e32d4d
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Showing 3 changed files with 10 additions and 4 deletions.
diff --git a/.gitignore b/.gitignore
@@ -124,3 +124,6 @@ dmypy.json
 .pyre/
 
 .idea/
+
+*.h5
+*.hdf5
diff --git a/pyproject.toml b/pyproject.toml
@@ -27,7 +27,6 @@ parallel = ["bsb-core[parallel]"]
 test = [
     "bsb-core[parallel]",
     "bsb-hdf5~=4.0",
-    "bsb-nest~=4.1",
     "bsb-test~=4.2",
     "coverage~=7.0"
 ]

diff --git a/tests/test_arbor.py b/tests/test_arbor.py
@@ -1,13 +1,17 @@
 import unittest
 
-from bsb import MPI, Scaffold, parse_configuration_file
-from bsb_test import RandomStorageFixture, get_test_config
+from bsb import MPI, Configuration, Scaffold
+from bsb_test import RandomStorageFixture, get_test_config_tree
 
 
 @unittest.skipIf(MPI.get_size() > 1, "Skipped during parallel testing.")
 class TestArbor(RandomStorageFixture, unittest.TestCase, engine_name="hdf5"):
     def test_brunel(self):
-        cfg = get_test_config("brunel_wbsb")
+        cfg = get_test_config_tree("brunel_wbsb")
+        # Remove unused nest simulation
+        # This way we do not have to install nest
+        del cfg["simulations"]["test_nest"]
+        cfg = Configuration(cfg)
         simcfg = cfg.simulations.test_arbor
 
         network = Scaffold(cfg, self.storage)