add sphinx_rtd_theme to doc requirements #121
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name: Build and test Glia | |
on: [push] | |
jobs: | |
build: | |
name: build py${{ matrix.py }}, NEURON ${{ matrix.nrn }} | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
py: ["3.9", "3.10"] | |
nrn: ["8.1.0", "8.2.3"] | |
include: | |
- py: "3.9" | |
nrn: "8.0.2" | |
- py: "3.11" | |
nrn: "8.2.3" | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.py }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.py }} | |
- name: Install apt dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install openmpi-bin libopenmpi-dev | |
- name: Cache pip | |
uses: actions/cache@v3 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
${{ runner.os }}- | |
- name: Install dependencies & self | |
run: | | |
python -m pip install --upgrade pip | |
pip install -e . --no-deps | |
pip install -r requirements.txt --prefer-binary | |
pip install -e . | |
pip install NEURON==${{ matrix.nrn }} | |
- name: Run package-free tests | |
run: coverage run -p -m unittest -v | |
- name: Install test package | |
run: pip install ./tests/data/packages/glia_test_mods | |
- name: Run serial tests | |
run: coverage run -p -m unittest -v | |
- name: Run parallel tests | |
run: mpiexec -n 2 coverage run -p -m unittest -v | |
- name: Test local package | |
run: | | |
glia pkg add ./tests/data/mods/Na.mod --local --name Na | |
glia compile | |
glia test Na | |
- name: Upload coverage reports | |
run: bash <(curl -s https://codecov.io/bash) |