Update changelog

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changelog.md

@@ -1,15 +1,36 @@
 # Changelog
 
-### v0.9.3 | 2017-05-29
+## v0.9.4 | in development
+
+* Fixed issues with multi-orbital models: matrix onsite terms were not set correctly if all the
+  elements on the main diagonal were zero ([#5](https://github.com/dean0x7d/pybinding/issues/5)),
+  hopping terms were being applied asymmetrically for large multi-orbital systems
+  ([#6](https://github.com/dean0x7d/pybinding/issues/6)). Thanks to
+  [@oroszl (László Oroszlány)](https://github.com/oroszl) for reporting the issues.
+
+* Fixed KPM Hamiltonian scaling for models with all zeros on the main diagonal but asymmetric
+  spectrum bounds (non-zero KPM scaling factor `b`).
+
+* Fixed compilation on certain Linux distributions
+  ([#4](https://github.com/dean0x7d/pybinding/issues/4)). Thanks to
+  [@nu11us (Will Eggleston)](https://github.com/nu11us) for reporting the issue.
+
+* Fixed compilation with Visual Studio 2017.
+
+* Improved support for plotting slices of multi-layer systems. See "Plotting Guide" > "Model
+  structure" > "Slicing layers" in the documentation.
+
+
+## v0.9.3 | 2017-05-29
 
 * Added support for Kwant v1.3.x and improved `Model.tokwant()` exporting of multi-orbital models.
 
 * Fixed errors when compiling with GCC 6.
 
 
-### v0.9.2 | 2017-05-26
+## v0.9.2 | 2017-05-26
 
-##### New KPM features and improvements
+#### New KPM features and improvements
 
 * Added a method for calculating spatial LDOS using KPM. See the "Kernel Polynomial Method"
   tutorial page and the `KPM.calc_spatial_ldos` API reference.
@@ -28,7 +49,7 @@
 
 * Long running KPM calculation now have a progress indicator and estimated completion time.
 
-##### General improvements and bug fixes
+#### General improvements and bug fixes
 
 * `StructureMap` can now be sliced using a shape. E.g. `s = pb.rectangle(5, 5); smap2 = smap[s]`
   which returns a smaller structure map cut down to the given shape.
@@ -45,7 +66,7 @@
 * Fixed slow Hamiltonian build when hopping generators are used.
 
 
-### v0.9.1 | 2017-04-28
+## v0.9.1 | 2017-04-28
 
 * Fixed an issue with multi-orbital models where onsite/hopping modifiers would return unexpected
   results if a new `energy` array was returned (rather than being modified in place).
@@ -57,9 +78,9 @@
   `StructureMap` mutable again.
 
 
-### v0.9.0 | 2017-04-14
+## v0.9.0 | 2017-04-14
 
-##### Updated requirements
+#### Updated requirements
 
 * This version includes extensive internal improvements and raises the minimum requirements for
   installation. Starting with this release, only Python >= 3.5 is supported. Newer versions of the
@@ -68,7 +89,7 @@
 * On Linux, the minimum compiler requirements have also been increased to get access to C++14 for
   the core of the library. To compile from source, you'll need GCC >= 5.0 or clang >= 3.5.
 
-##### Multi-orbital models
+#### Multi-orbital models
 
 * Improved support for models with multiple orbitals, spins and any additional degrees of freedom.
   These can now be specified simply by inputing a matrix as the onsite or hopping term (instead of
@@ -83,13 +104,13 @@
 * Added a 3-band model of group 6 transition metal dichalcogenides to the Material Repository.
   The available TMDs include: MoS2, WS2, MoSe2, WSe2, MoTe2, WTe2. These are all monolayers.
 
-##### Composite shapes
+#### Composite shapes
 
 * Complicated system geometries can now be created easily by composing multiple simple shapes.
   This is done using set operations, e.g. unions, intersections, etc. A complete guide for this
   functionality is available in the "Composite shapes" section of the documentation.
 
-##### Kernel polynomial method
+#### Kernel polynomial method
 
 * The KPM implementation has been revised and significantly expanded. A guide and several examples
   are available in the "Kernel polynomial method" section of the documentation (part 9 of the
@@ -105,7 +126,7 @@
 * The performance of various KPM computations has been significantly improved for CPUs with AVX
   support (~1.5x speedup on average, but also up to 2x in some cases with complex numbers).
 
-##### Miscellaneous
+#### Miscellaneous
 
 * Added the `pb.save()` and `pb.load()` convenience functions for getting result objects into/out
   of files. The data is saved in a compressed binary format (Python's builtin `pickle` format with
@@ -118,7 +139,7 @@
 * Improved plotting of `Lattice` objects. The view can now be rotated by passing the `axis="xz"`
   argument, or any other combination of x, y and z to define the plotting plane.
 
-##### Deprecations and breaking changes
+#### Deprecations and breaking changes
 
 * Added `Lattice.add_aliases()` method. The old `Lattice.add_sublattice(..., alias=name)` way of
   creating aliases is deprecated.
@@ -129,7 +150,7 @@
   shouldn't affect most users who don't need access to the low-level data.
 
 
-### v0.8.2 | 2017-01-26
+## v0.8.2 | 2017-01-26
 
 * Added support for Python 3.6 (pybinding is available as a binary wheel for Windows and macOS).
 
@@ -138,7 +159,7 @@
 * Fixed a few minor bugs.
 
 
-### v0.8.1 | 2016-11-11
+## v0.8.1 | 2016-11-11
 
 * Structure plotting functions have been improved with better automatic scaling of lattice site
   circle sizes and hopping line widths.
@@ -155,9 +176,9 @@
 * Revised advanced installation instructions: compiling from source code and development.
 
 
-### v0.8.0 | 2016-07-01
+## v0.8.0 | 2016-07-01
 
-##### New features
+#### New features
 
 * Added support for scattering models. Semi-infinite leads can be attached to a finite-sized
   scattering region. Take a look at the documentation, specifically section 10 of the "Basic
@@ -172,7 +193,7 @@
 * *Experimental:* Initial CUDA implementation of KPM Green's function (only for diagonal elements
   for now). See the "Experimental Features" section of the documentation.
 
-##### Improvements
+#### Improvements
 
 * The performance of the KPM Green's function implementation has been improved significantly:
   by a factor of 2.5x. The speedup was achieved with CPU code using portable SIMD intrinsics
@@ -183,7 +204,7 @@
 * The spatial origin of a lattice can be adjusted using the `Lattice.offset` attribute. See the
   "Advanced Topics" section.
 
-##### Breaking changes
+#### Breaking changes
 
 * The interface for structure plotting (as used in `System.plot()` and `StructureMap`) has been
   greatly improved. Some of the changes are not backwards compatible and may require some minor
@@ -194,7 +215,7 @@
   replaced by `smap2 = smap[smap.x > 0]`. The "Plotting Guide" has a few examples and there is a
   full method listing in the "API Reference" section.
 
-##### Documentation
+#### Documentation
 
 * The API reference has been completely revised and now includes a summary on the main page.
 
@@ -203,14 +224,14 @@
 
 * Experimental features are now documented.
 
-##### Bug fixes
+#### Bug fixes
 
 * Fixed translational symmetry skipping directions for some 2D systems.
 * Fixed computation of off-diagonal Green's function elements with `opt_level > 0`
 * Fixed some issues with shapes which were not centered at `(x, y) = (0, 0)`.
 
 
-### v0.7.2 | 2016-03-14
+## v0.7.2 | 2016-03-14
 
 * Lots of improvements to the documentation. The tutorial pages can now be downloaded and run
   interactively as Jupyter notebooks. The entire user guide is also available as a PDF file.
@@ -233,7 +254,7 @@
   additional local hoppings, e.g. to model defects.
 
 
-### v0.7.1 | 2016-02-08
+## v0.7.1 | 2016-02-08
 
 * Added support for double-precision floating point. Single precision is used by default,
   but it will be switched automatically to double if required by an onsite or hopping modifier.
@@ -251,6 +272,6 @@
   and OS X (Python 3.4 and 3.5)
 
 
-### v0.7.0 | 2016-02-01
+## v0.7.0 | 2016-02-01
 
 Initial release

setup.py

@@ -92,7 +92,7 @@ def changelog():
 
     with open("changelog.md") as file:
         log = file.read()
-    match = re.search(r"### ([\s\S]*?)\n###\s", log)
+    match = re.search(r"## ([\s\S]*?)\n##\s", log)
     return match.group(1) if match else ""