[Snyk] Security upgrade zipp from 3.15.0 to 3.19.1 #1461
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test Pepys | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| test-linux: | |
| name: Linux | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install apt dependencies | |
| shell: bash -l {0} | |
| run: | | |
| wget --quiet -O - https://www.postgresql.org/media/keys/ACCC4CF8.asc | \ | |
| sudo apt-key add - | |
| sudo sh -c 'echo "deb http://apt.postgresql.org/pub/repos/apt/ focal-pgdg main" >> /etc/apt/sources.list.d/postgresql.list' | |
| sudo apt update | |
| # workaround for pg14 being present in GitHub base image of Ubuntu | |
| sudo apt remove postgresql-14 postgresql-client | |
| sudo apt install -y postgresql-13-postgis-3 sqlite3 libgdal-dev libproj-dev libproj-dev libsqlite3-dev spatialite-bin libsqlite3-mod-spatialite | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Install pip dependencies | |
| shell: bash -l {0} | |
| run: | | |
| pip install -r requirements.txt | |
| pip install -r requirements_dev.txt | |
| - name: Install pytest GH Actions plugin | |
| shell: bash -l {0} | |
| run: pip install pytest-github-actions-annotate-failures | |
| - name: Run tests (non GUI) | |
| shell: bash -l {0} | |
| env: | |
| PEPYS_SPATIALITE_PATH: /usr/lib/x86_64-linux-gnu/mod_spatialite.so | |
| SQLALCHEMY_WARN_20: 1 | |
| run: | | |
| coverage3 run -m pytest -v --color=yes --ignore=tests/gui_tests tests/ -Werror | |
| - name: Run tests (GUI) | |
| shell: bash -l {0} | |
| env: | |
| PEPYS_SPATIALITE_PATH: /usr/lib/x86_64-linux-gnu/mod_spatialite.so | |
| SQLALCHEMY_WARN_20: 1 | |
| run: | | |
| coverage3 run -a -m pytest -v --color=yes -s tests/gui_tests -Werror | |
| - name: Run black | |
| shell: bash -l {0} | |
| run: | | |
| black --check --diff importers pepys_import pepys_admin pepys_timeline tests | |
| - name: Run isort | |
| shell: bash -l {0} | |
| run: | | |
| isort --check-only --diff importers pepys_import pepys_admin pepys_timeline tests | |
| - name: Get coverage report | |
| shell: bash -l {0} | |
| run: | | |
| coverage3 report | |
| coverage3 xml | |
| - uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| test-windows: | |
| name: Windows | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| # - name: Install Postgres 12 | |
| # uses: crazy-max/ghaction-chocolatey@v1 | |
| # with: | |
| # args: install postgresql12 | |
| # - name: Stop Postgres service | |
| # shell: powershell | |
| # run: | | |
| # Stop-Service postgresql-x64-12 | |
| - name: Run setup Powershell script | |
| shell: cmd | |
| run: powershell.exe -executionpolicy remotesigned -File .\.github\workflows\setup_windows.ps1 | |
| - name: Set up environment variables | |
| shell: bash -l {0} | |
| run: | | |
| echo "C:\Program Files\PostgreSQL\12\bin" >> $GITHUB_PATH | |
| echo ".\lib\spatialite-loadable-modules-5.0.0-win-amd64" >> $GITHUB_PATH | |
| echo "PYTHONPATH=.\lib\sqlite-python" >> $GITHUB_ENV | |
| - name: Install pip dependencies | |
| shell: cmd | |
| run: | | |
| pip install -r requirements.txt | |
| pip install -r requirements_dev.txt | |
| - name: Install pytest GH Actions plugin | |
| shell: bash -l {0} | |
| run: pip install pytest-github-actions-annotate-failures | |
| # This actions runs all tests under a different user so that Postgres doesn't complain | |
| # It has various issues - it seems to cause other tests to fail, seems to be slow to produce output on the online GH Actions | |
| # console, and seems to run into MemoryErrors. At the moment it isn't worth debugging these as running the Postgres tests | |
| # on Windows isn't that important to us. | |
| # | |
| # To try this again: | |
| # 1. Uncomment this section below, plus the two sections above which install and setup Postgres | |
| # 2. Uncomment the commented section in setup_windows.ps1 which installs PostGIS | |
| # | |
| # - name: Run tests (with Postgres) | |
| # shell: cmd | |
| # run: powershell.exe -executionpolicy remotesigned -File .\.github\workflows\windows_run_tests.ps1 | |
| - name: Run tests (no Postgres) | |
| shell: cmd | |
| run: python.exe -m pytest -v --color=yes tests -m "not postgres" -Werror | |
| env: | |
| SQLALCHEMY_WARN_20: 1 |