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Modify post_fp_cp2k, adapt to SCF not converged situation. #1562

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Modify post_fp_cp2k, adapt to SCF not converged situation. #1562

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169183e
Modify the post_fp_cp2k function to generate multisystem data. Allows…
dulinhan Apr 10, 2024
c06a35f
Increase the robustness of cp2k post fp (when scf not converged occurs)
dulinhan May 28, 2024
0663bd3
Merge branch 'devel' of https://github.com/dulinhan/dpgen into modify…
dulinhan Jun 7, 2024
4214d77
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 7, 2024
01581e9
Merge branch 'devel' into modify_post_fp_cp2k
dulinhan Jul 10, 2024
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8 changes: 8 additions & 0 deletions dpgen/generator/run.py
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Original file line number Diff line number Diff line change
Expand Up @@ -4497,14 +4497,22 @@
sys_output = glob.glob(os.path.join(work_path, f"task.{ss}.*/output"))
sys_output.sort()
tcount += len(sys_output)
log_file_path = os.path.join(work_path, f"{ss}.fp-fail.log")
all_sys = dpdata.MultiSystems(type_map=jdata["type_map"])
for oo in sys_output:
with open(oo) as file:
content = file.read()
if "SCF run NOT converged" in content:
with open(log_file_path, "a") as log_file:
log_file.write(f"Skipping file {oo} due to SCF run NOT converged\n")
continue

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move these lines after _sys=dpdata.LabeledSystem

Suggested change
with open(oo) as file:
content = file.read()
if "SCF run NOT converged" in content:
with open(log_file_path, "a") as log_file:
log_file.write(f"Skipping file {oo} due to SCF run NOT converged\n")
continue
if len(_sys) == 0:
with open(log_file_path, "a") as log_file:
log_file.write(f"Skipping file {oo} due to SCF run NOT converged\n")
continue

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Move SCF check and logging after _sys instantiation

To ensure _sys is only instantiated if SCF converges, move these lines after _sys=dpdata.LabeledSystem.

-            if "SCF run NOT converged" in content:
-                with open(log_file_path, "a") as log_file:
-                    log_file.write(f"Skipping file {oo} due to SCF run NOT converged\n")
-                continue
            _sys = dpdata.LabeledSystem(
                oo, fmt="cp2kdata/e_f", type_map=jdata["type_map"]
            )
+            if "SCF run NOT converged" in content:
+                with open(log_file_path, "a") as log_file:
+                    log_file.write(f"Skipping file {oo} due to SCF run NOT converged\n")
+                continue
Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
if "SCF run NOT converged" in content:
with open(log_file_path, "a") as log_file:
log_file.write(f"Skipping file {oo} due to SCF run NOT converged\n")
continue
_sys = dpdata.LabeledSystem(
oo, fmt="cp2kdata/e_f", type_map=jdata["type_map"]
)
if "SCF run NOT converged" in content:
with open(log_file_path, "a") as log_file:
log_file.write(f"Skipping file {oo} due to SCF run NOT converged\n")
continue

_sys = dpdata.LabeledSystem(
oo, fmt="cp2kdata/e_f", type_map=jdata["type_map"]
)
all_sys.append(_sys)
icount += 1

icount += len(all_sys)
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Duplicate icount increment

icount is incremented twice. Remove the duplicate increment.

-        icount += len(all_sys)

Committable suggestion was skipped due to low confidence.

if (all_sys is not None) and (len(all_sys) > 0):
sys_data_path = os.path.join(work_path, f"data.{ss}")
all_sys.to_deepmd_raw(sys_data_path)
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