TPD: A Computational Pipeline for Therapeutic Phage Discovery from Prophages

Install

conda env create -f environment.yml

nextflow run tpd.nf -profile hpc_slurm --mode "all" --datadir data -resume

If you want to add previous predicted prophages, put ${sampleID}_old.gbk in data folder.

Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
bin		bin
imgs		imgs
modules		modules
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
environments.yml		environments.yml
gbk_annotation.nf		gbk_annotation.nf
nextflow.config		nextflow.config
predict_prophages.nf		predict_prophages.nf
tpd.nf		tpd.nf