[DRAFT] Pugh lab main [just to compare]#17

Draft

curlup wants to merge 29 commits intodfci:masterfrom

pughlab:pugh-lab-main

Commits on Oct 18, 2021

fix loading genomic data flag, yml format, and matching clinical vital status
mickey-ng
committed

Commits on Feb 17, 2022

Add extra fields to match and fields to resulting match document
mickey-ng
committed

Commits on Mar 11, 2022

Add extra solid tumor mapping, make oncotree diagnosis query case insensitive
mickey-ng
committed

Commits on Apr 1, 2022

add mutation effect to match document
mickey-ng
committed
add molecular function mapping, fix bug with oncotree diagnosis case insensitive match
mickey-ng
committed

Commits on Apr 24, 2023

Commits on Apr 27, 2023

fix case insensitive oncotree diagnosis match with regex to strict match
mickey-ng
committed

Commits on May 19, 2023

rewrite case insensitive match to use or instead of in to pair with regex
mickey-ng
committed

Commits on Jun 1, 2023

make oncotree primary diagnosis query ignore NA in data
mickey-ng
committed

Commits on Jun 6, 2023

CTM-217 remove unknown from inactivating mapping
mickey-ng
committed

Commits on Jul 4, 2023

dockerize
artonio
committed

Commits on Jul 6, 2023

Commits on Jul 12, 2023

added map_clinical_to_genomic
artonio
committed

Commits on Jul 20, 2023

add value match for wildtype when recording result
mickey-ng
committed

Commits on Jul 21, 2023

Commits on Aug 2, 2023

CTM-289: fix structural variation matching without report date
mickey-ng
committed

Commits on Aug 3, 2023

Merge pull request #2 from pughlab/genomic_match_all
artonio
authored

Commits on Aug 4, 2023

CTM-293 add short title to result db
mickey-ng
committed

Commits on Aug 16, 2023

CTM-303 update oncotree definition
mickey-ng
committed

Commits on Aug 23, 2023

test submodule commit
mickey-ng
committed

Commits on Aug 30, 2023

test upload
mickey-ng
committed