Trying Github actions to update benchmarks sutomatically

.github/workflows/Readme.yml

@@ -0,0 +1,23 @@
+name: Embed code in README
+
+on:
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  embed-code:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
+          fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
+          ref: refs/heads/${{ github.head_ref }}
+
+      - uses: tokusumi/markdown-embed-code@main
+        with:
+          markdown: "README.md"
+          token: ${{ secrets.GITHUB_TOKEN }}
+          message: "synchronizing Readme"
+          silent: true

README.md

@@ -34,102 +34,11 @@ For more information check how to submit jobs to Perlmutter.
 ### Benchmarks
 
 The benchmarks below are from the scripts in `test/` and performed with `BenchmarkTools.jl` and the `Base` Julia timer (for the less important parts). On the [CPU](https://github.com/dforero0896/BAOrec.jl/blob/main/test/benchmarks_cpu.out)
+```bash:test/benchmarks_cpu.out
 ```
-Using 128 threads.
-CPU benchmarking...
-Struct
-  0.015896 seconds (20.93 k allocations: 1.261 MiB, 96.31% compilation time)
-Reconstruction iterative run
-  27.428 s (46141 allocations: 7.52 GiB)
-Read positions from recon result
-  585.135 ms (129131052 allocations: 3.72 GiB)
-Struct
-  0.015992 seconds (25.80 k allocations: 1.562 MiB, 96.49% compilation time)
-Reconstruction multigrid run
-  24.792 s (1734580 allocations: 19.96 GiB)
-Read positions from recon result
-  1.448 s (129131100 allocations: 4.22 GiB)
-```
-
 On the [GPU](https://github.com/dforero0896/BAOrec.jl/blob/main/test/benchmarks_gpu.out)
-```Using 128 threads.
-GPU benchmarking...
-Data copy to GPU
-  1.656354 seconds (2.31 M allocations: 222.114 MiB, 77.85% compilation time)
-  0.067086 seconds (49.28 k allocations: 101.376 MiB, 51.22% compilation time)
-Struct
-  0.016367 seconds (20.93 k allocations: 1.261 MiB, 94.44% compilation time)
-Reconstruction iterative run
-TrialEstimate(595.770 ms)
-BenchmarkTools.Trial
-  params: BenchmarkTools.Parameters
-    seconds: Float64 5.0
-    samples: Int64 10000
-    evals: Int64 1
-    overhead: Float64 0.0
-    gctrial: Bool true
-    gcsample: Bool false
-    time_tolerance: Float64 0.05
-    memory_tolerance: Float64 0.01
-  times: Array{Float64}((9,)) [6.19338084e8, 5.85914455e8, 5.95770487e8, 5.95403127e8, 5.89746708e8, 6.44420176e8, 6.67371721e8, 5.82569621e8, 6.0782504e8]
-  gctimes: Array{Float64}((9,)) [0.0, 0.0, 0.0, 0.0, 4.136115e6, 0.0, 0.0, 4.294532e6, 0.0]
-  memory: Int64 616880
-  allocs: Int64 10106
-Read positions from recon result
-TrialEstimate(52.010 ms)
-BenchmarkTools.Trial
-  params: BenchmarkTools.Parameters
-    seconds: Float64 5.0
-    samples: Int64 10000
-    evals: Int64 1
-    overhead: Float64 0.0
-    gctrial: Bool true
-    gcsample: Bool false
-    time_tolerance: Float64 0.05
-    memory_tolerance: Float64 0.01
-  times: Array{Float64}((91,)) [5.0593235e7, 6.8096218e7, 1.02470894e8, 4.7207952e7, 5.0682268e7, 4.6011949e7, 5.3779904e7, 6.1123841e7, 7.4825356e7, 4.2027007e7  …  4.8147999e7, 4.4062783e7, 4.5516833e7, 5.1040159e7, 5.0341599e7, 5.830944e7, 4.7245284e7, 5.3624995e7, 5.3261573e7, 4.7555834e7]
-  gctimes: Array{Float64}((91,)) [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0  …  0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
-  memory: Int64 80384
-  allocs: Int64 1431
-Copy results to CPU
-  0.021447 seconds (4.30 k allocations: 98.762 MiB, 24.60% compilation time)
-Struct
-  0.016492 seconds (25.80 k allocations: 1.562 MiB, 95.65% compilation time)
-Reconstruction multigrid run
-TrialEstimate(1.820 s)
-BenchmarkTools.Trial
-  params: BenchmarkTools.Parameters
-    seconds: Float64 5.0
-    samples: Int64 10000
-    evals: Int64 1
-    overhead: Float64 0.0
-    gctrial: Bool true
-    gcsample: Bool false
-    time_tolerance: Float64 0.05
-    memory_tolerance: Float64 0.01
-  times: Array{Float64}((3,)) [1.819561052e9, 1.917072578e9, 1.767079466e9]
-  gctimes: Array{Float64}((3,)) [0.0, 1.7609118e7, 0.0]
-  memory: Int64 28719152
-  allocs: Int64 445156
-Read positions from recon result
-TrialEstimate(43.777 ms)
-BenchmarkTools.Trial
-  params: BenchmarkTools.Parameters
-    seconds: Float64 5.0
-    samples: Int64 10000
-    evals: Int64 1
-    overhead: Float64 0.0
-    gctrial: Bool true
-    gcsample: Bool false
-    time_tolerance: Float64 0.05
-    memory_tolerance: Float64 0.01
-  times: Array{Float64}((105,)) [4.4726826e7, 3.9916308e7, 4.1223725e7, 4.5721919e7, 4.1492334e7, 4.1519807e7, 4.9516615e7, 4.3800055e7, 4.2899173e7, 4.6753172e7  …  4.3837387e7, 3.8426798e7, 3.8705437e7, 4.8431356e7, 4.432548e7, 3.7102207e7, 3.9450497e7, 5.8317155e7, 5.4813162e7, 4.5284053e7]
-  gctimes: Array{Float64}((105,)) [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 4.454491e6  …  0.0, 0.0, 0.0, 0.0, 3.027712e6, 0.0, 0.0, 0.0, 0.0, 0.0]
-  memory: Int64 75824
-  allocs: Int64 1433
-Copy results to CPU
-  0.013548 seconds (10 allocations: 98.512 MiB)
-  ```
+```bash:test/benchmarks_gpu.out
+```
 
 I am not *that* confident I am properly benchmarking the GPU runs given that they look a bit *too* fast.