Set up CI pipeline with GitHub Actions #9

.github/workflows/ci.yml

@@ -0,0 +1,43 @@
+name: CI
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+
+jobs:
+  ci:
+    runs-on: ubuntu-latest
+    timeout-minutes: 3
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python 3.12
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+          cache: pip
+
+      - name: Install package with dev dependencies
+        run: pip install -e ".[dev]"
+
+      - name: Lint
+        run: ruff check src/ sim/
+
+      - name: Format check
+        run: ruff format --check src/ sim/
+
+      - name: Type check
+        run: pyright src/
+
+      - name: Test
+        run: pytest -v --tb=short --cov=src/cyberhosp --cov-report=xml --cov-report=term tests/
+
+      - name: Upload coverage report
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-report
+          path: coverage.xml
+          if-no-files-found: error

README.md

@@ -1,5 +1,6 @@
 # CyberHosp
 
+[![CI](https://github.com/dhedhialy/cyberhosp/actions/workflows/ci.yml/badge.svg)](https://github.com/dhedhialy/cyberhosp/actions/workflows/ci.yml)
 [![License: AGPL v3](https://img.shields.io/badge/License-AGPL_v3-blue.svg)](LICENSE)
 [![Python 3.12+](https://img.shields.io/badge/python-3.12%2B-blue)](pyproject.toml)
 [![Code style: ruff](https://img.shields.io/badge/code%20style-ruff-000000.svg)](https://github.com/astral-sh/ruff)

pyproject.toml

@@ -28,6 +28,7 @@ dev = [
     "ruff>=0.5.0",
     "pytest>=8.0",
     "pytest-cov>=5.0",
+    "pyright>=1.1.0",
 ]
 
 [tool.ruff]
@@ -36,3 +37,15 @@ target-version = "py312"
 
 [tool.ruff.lint]
 select = ["E", "F", "I", "N", "W", "UP"]
+
+[tool.pyright]
+pythonVersion = "3.12"
+typeCheckingMode = "basic"
+reportUnknownParameterType = false
+reportMissingTypeStubs = false
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+
+[tool.coverage.run]
+source = ["cyberhosp"]

sim/.gitkeep

@@ -0,0 +1 @@
+

tests/test_integration.py

@@ -1,5 +1,15 @@
 """Integration layer tests."""
 
+from cyberhosp.integration.base import EHRAdapter, EHRConfig
+from cyberhosp.integration.fhir import FHIRAdapter
+
 
 class TestEHRAdapter:
-    pass
+    def test_fhir_adapter_inherits_ehradapter(self) -> None:
+        config = EHRConfig(
+            vendor="test",
+            base_url="https://example.com/fhir",
+            auth_method="oauth2",
+            api_version="R4",
+        )
+        assert isinstance(FHIRAdapter(config), EHRAdapter)

tests/test_monitor.py

@@ -1,5 +1,14 @@
 """Audit and monitoring tests."""
 
+from cyberhosp.monitor.analyzer import BehaviorAnalyzer
+from cyberhosp.monitor.audit import AuditPipeline
+
 
 class TestAuditPipeline:
-    pass
+    def test_audit_pipeline_instantiable(self) -> None:
+        assert type(AuditPipeline()) is AuditPipeline
+
+
+class TestBehaviorAnalyzer:
+    def test_behavior_analyzer_instantiable(self) -> None:
+        assert type(BehaviorAnalyzer()) is BehaviorAnalyzer