use built-in pandoc for quarto

fhs.nix

@@ -114,8 +114,13 @@ let
       linuxPackages.nvidia_x11
     ];
 
+
   quartoPackages = pkgs:
-    with pkgs; [ quarto ];
+  let
+    quarto = pkgs.callPackage ./quarto.nix {
+      rWrapper = null;
+    };
+  in [ quarto ];
 
   condaPackages = pkgs:
     with pkgs;
@@ -133,7 +138,7 @@ let
     (standardPackages pkgs)
     ++ optionals enableGraphical (graphicalPackages pkgs)
     ++ optionals enableJulia [(pkgs.callPackage ./julia.nix { juliaVersion=juliaVersion; })]
-    ++ optionals enableQuarto (quartoPackages pkgs);
+    ++ optionals enableQuarto (quartoPackages pkgs)
     ++ optionals enableConda (condaPackages pkgs)
     ++ optionals enableNVIDIA (nvidiaPackages pkgs)
     ++ optionals enablePython (pythonPackages pkgs);

fix-deno-path.patch

@@ -0,0 +1,8 @@
+--- a/bin/quarto
++++ b/bin/quarto
+@@ -125,4 +125,4 @@ fi
+ # Be sure to include any already defined QUARTO_DENO_OPTIONS
+ QUARTO_DENO_OPTIONS="--unstable --no-config --cached-only --allow-read --allow-write --allow-run --allow-env --allow-net --allow-ffi ${QUARTO_DENO_OPTIONS}"
+
+-"${QUARTO_DENO}" ${QUARTO_ACTION} ${QUARTO_DENO_OPTIONS} ${QUARTO_DENO_EXTRA_OPTIONS} "${QUARTO_IMPORT_ARGMAP}" "${QUARTO_TARGET}" "$@"
++deno ${QUARTO_ACTION} ${QUARTO_DENO_OPTIONS} ${QUARTO_DENO_EXTRA_OPTIONS} "${QUARTO_IMPORT_ARGMAP}" "${QUARTO_TARGET}" "$@"

quarto.nix

@@ -0,0 +1,88 @@
+{ stdenv
+, lib
+, esbuild
+, deno
+, fetchurl
+, dart-sass
+, rWrapper
+, rPackages
+, extraRPackages ? []
+, makeWrapper
+, runCommand
+, python3
+, quarto
+, extraPythonPackages ? ps: with ps; []
+, sysctl
+}:
+
+stdenv.mkDerivation (final: {
+  pname = "quarto";
+  version = "1.3.450";
+  src = fetchurl {
+    url = "https://github.com/quarto-dev/quarto-cli/releases/download/v${final.version}/quarto-${final.version}-linux-amd64.tar.gz";
+    sha256 = "sha256-bcj7SzEGfQxsw9P8WkcLrKurPupzwpgIGtxoE3KVwAU=";
+  };
+
+  nativeBuildInputs = [
+    makeWrapper
+  ];
+
+  patches = [
+    ./fix-deno-path.patch
+  ];
+
+  postPatch = ''
+    # Compat for Deno >=1.26
+    substituteInPlace bin/quarto.js \
+      --replace 'Deno.setRaw(stdin.rid, ' 'Deno.stdin.setRaw(' \
+      --replace 'Deno.setRaw(Deno.stdin.rid, ' 'Deno.stdin.setRaw('
+  '';
+
+  dontStrip = true;
+
+  preFixup = ''
+    wrapProgram $out/bin/quarto \
+      --prefix PATH : ${lib.makeBinPath [ deno ]} \
+      --prefix QUARTO_ESBUILD : ${esbuild}/bin/esbuild \
+      --prefix QUARTO_DART_SASS : ${dart-sass}/bin/dart-sass \
+      ${lib.optionalString (rWrapper != null) "--prefix QUARTO_R : ${rWrapper.override { packages = [ rPackages.rmarkdown ] ++ extraRPackages; }}/bin/R"} \
+      ${lib.optionalString (python3 != null) "--prefix QUARTO_PYTHON : ${python3.withPackages (ps: with ps; [ jupyter ipython ] ++ (extraPythonPackages ps))}/bin/python3"}
+  '';
+
+  installPhase = ''
+      runHook preInstall
+
+      mkdir -p $out/bin $out/share
+
+      rm -r bin/tools
+
+      mv bin/* $out/bin
+      mv share/* $out/share
+
+      runHook postInstall
+  '';
+
+  passthru.tests = {
+    quarto-check = runCommand "quarto-check" {
+      nativeBuildInputs = lib.optionals stdenv.isDarwin [ sysctl ];
+    } ''
+      export HOME="$(mktemp -d)"
+      ${quarto}/bin/quarto check
+      touch $out
+    '';
+  };
+
+  meta = with lib; {
+    description = "Open-source scientific and technical publishing system built on Pandoc";
+    longDescription = ''
+        Quarto is an open-source scientific and technical publishing system built on Pandoc.
+        Quarto documents are authored using markdown, an easy to write plain text format.
+    '';
+    homepage = "https://quarto.org/";
+    changelog = "https://github.com/quarto-dev/quarto-cli/releases/tag/v${version}";
+    license = licenses.gpl2Plus;
+    maintainers = with maintainers; [ minijackson mrtarantoga ];
+    platforms = platforms.all;
+    sourceProvenance = with sourceTypes; [ binaryNativeCode binaryBytecode ];
+  };
+})