Skip to content

Commit

Permalink
Merge branch 'release/v1.5.1'
Browse files Browse the repository at this point in the history
  • Loading branch information
dputhier committed Nov 3, 2021
2 parents d895f73 + 36a543b commit 815ef75
Show file tree
Hide file tree
Showing 94 changed files with 224 additions and 212 deletions.
26 changes: 22 additions & 4 deletions changelog.md
Original file line number Diff line number Diff line change
@@ -1,12 +1,33 @@

# Changelog

## v1.5.1

### Bug Fixes

* Fix "Index.ravel() returning a np.ndarray is deprecated" in pandas.

* Fix pillow requirements (8.4.0).

* Add requirement for libjpeg-devel installation in build_wheels.sh (pillow requirement).

* Force --no-cache when building docker image for manylinux package.

### API/CLI Changes


### Code changes



### New Features



## v1.5.0

### Bug Fixes

*

### API/CLI Changes

Expand All @@ -20,9 +41,6 @@
### New Features


# Changelog


## v1.4.0

### Bug Fixes
Expand Down
Binary file modified docs/_images/example_01.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_images/example_02.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_images/example_05.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_images/example_06.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_images/example_06b.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_images/example_07.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_images/example_08.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_images/example_13.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
2 changes: 1 addition & 1 deletion docs/_static/documentation_options.js
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
var DOCUMENTATION_OPTIONS = {
URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
VERSION: '1.5.0',
VERSION: '1.5.1',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
Expand Down
Binary file modified docs/_static/example_01.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_02.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_05.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_06.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_06b.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_07.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_08.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_13.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified docs/_static/example_pa_01.pdf
Binary file not shown.
Binary file modified docs/_static/example_pa_02.pdf
Binary file not shown.
Binary file modified docs/_static/example_pa_03.pdf
Binary file not shown.
Binary file modified docs/_static/example_pa_04.pdf
Binary file not shown.
Binary file modified docs/_static/merge_ologram_stats_01.pdf
Binary file not shown.
Binary file modified docs/_static/treeified.pdf
Binary file not shown.
6 changes: 3 additions & 3 deletions docs/about.html
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
<title>Warning about supported GTF file formats &#8212; gtftk 1.5.0 documentation</title>
<title>Warning about supported GTF file formats &#8212; gtftk 1.5.1 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/nature.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
Expand Down Expand Up @@ -45,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="index.html" title="Welcome to pygtftk documentation page"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Warning about supported GTF file formats</a></li>
</ul>
</div>
Expand Down Expand Up @@ -201,7 +201,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="index.html" title="Welcome to pygtftk documentation page"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Warning about supported GTF file formats</a></li>
</ul>
</div>
Expand Down
6 changes: 3 additions & 3 deletions docs/annotation.html
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
<title>Commands from section ‘annotation’ &#8212; gtftk 1.5.0 documentation</title>
<title>Commands from section ‘annotation’ &#8212; gtftk 1.5.1 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/nature.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
Expand Down Expand Up @@ -45,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="conversion.html" title="Commands from section ‘conversion’"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Commands from section ‘annotation’</a></li>
</ul>
</div>
Expand Down Expand Up @@ -475,7 +475,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="conversion.html" title="Commands from section ‘conversion’"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Commands from section ‘annotation’</a></li>
</ul>
</div>
Expand Down
6 changes: 3 additions & 3 deletions docs/api.html
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
<title>Help on Python package (pygtftk) &#8212; gtftk 1.5.0 documentation</title>
<title>Help on Python package (pygtftk) &#8212; gtftk 1.5.1 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/nature.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
Expand Down Expand Up @@ -45,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="miscellaneous.html" title="Commands from section ‘miscellaneous’"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Help on Python package (pygtftk)</a></li>
</ul>
</div>
Expand Down Expand Up @@ -3737,7 +3737,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="miscellaneous.html" title="Commands from section ‘miscellaneous’"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Help on Python package (pygtftk)</a></li>
</ul>
</div>
Expand Down
6 changes: 3 additions & 3 deletions docs/bwig_coverage.html
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
<title>The pygtftk.bwig.bw_coverage module &#8212; gtftk 1.5.0 documentation</title>
<title>The pygtftk.bwig.bw_coverage module &#8212; gtftk 1.5.1 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/nature.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
Expand Down Expand Up @@ -45,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="api.html" title="Help on Python package (pygtftk)"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">The pygtftk.bwig.bw_coverage module</a></li>
</ul>
</div>
Expand Down Expand Up @@ -178,7 +178,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="api.html" title="Help on Python package (pygtftk)"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">The pygtftk.bwig.bw_coverage module</a></li>
</ul>
</div>
Expand Down
6 changes: 3 additions & 3 deletions docs/conversion.html
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
<title>Commands from section ‘conversion’ &#8212; gtftk 1.5.0 documentation</title>
<title>Commands from section ‘conversion’ &#8212; gtftk 1.5.1 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/nature.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
Expand Down Expand Up @@ -45,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="selection.html" title="Commands from section ‘selection’"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Commands from section ‘conversion’</a></li>
</ul>
</div>
Expand Down Expand Up @@ -320,7 +320,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="selection.html" title="Commands from section ‘selection’"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Commands from section ‘conversion’</a></li>
</ul>
</div>
Expand Down
6 changes: 3 additions & 3 deletions docs/coordinates.html
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
<title>Commands from section ‘coordinates’ &#8212; gtftk 1.5.0 documentation</title>
<title>Commands from section ‘coordinates’ &#8212; gtftk 1.5.1 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/nature.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
Expand Down Expand Up @@ -45,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="ologram.html" title="Commands from section ‘ologram’"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Commands from section ‘coordinates’</a></li>
</ul>
</div>
Expand Down Expand Up @@ -423,7 +423,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="ologram.html" title="Commands from section ‘ologram’"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">gtftk 1.5.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Commands from section ‘coordinates’</a></li>
</ul>
</div>
Expand Down
Loading

0 comments on commit 815ef75

Please sign in to comment.