Coverage action

.coveragerc

@@ -0,0 +1,5 @@
+[run]
+relative_files = True
+omit =
+	*tests*
+	*bottle.py

.github/workflows/coverage-badge-and-comment.yml

@@ -0,0 +1,109 @@
+# This is a basic workflow to help you get started with Actions
+
+name: Coverage
+
+# Controls when the action will run. Triggers the workflow on push or pull request 
+# events but only for the master branch
+on:
+  push:
+    branches: [ master, gis-based-mode-detection ]
+  pull_request:
+    branches: [ master, gis-based-mode-detection ]
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  build:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+    - uses: actions/checkout@v2
+
+    - name: Install and start MongoDB
+      uses: supercharge/[email protected]
+      with:
+        mongodb-version: 4.4.0
+
+    - name: Check existing version of miniconda
+      shell: bash -l {0}
+      run: conda info -a
+
+    - name: Install miniconda
+      shell: bash -l {0}
+      run: |
+        source setup/setup_conda.sh Linux-x86_64
+
+    - name: Check whether the CI environment variable is set
+      shell: bash -l {0}
+      run: |
+        source setup/activate_conda.sh
+        echo $CI
+
+    - name: Setup the emission environment for testing
+      shell: bash -l {0}
+      run: |
+        conda --version
+        which conda
+        source setup/activate_conda.sh
+        conda --version
+        source setup/setup.sh
+        conda env list
+
+    - name: Switch to emission, install/run Coverage
+      shell: bash -l {0}
+      run: |
+        conda env list
+        source setup/activate.sh
+        conda env list
+        pip install coverage
+        coverage --version
+        export PYTHONPATH=.
+        coverage run -m unittest discover -s emission/tests -p Test*;
+        coverage report
+
+    - name: Coverage Badge
+      uses: tj-actions/[email protected]
+
+    - name: Verify Changed files
+      uses: tj-actions/verify-changed-files@v9
+      id: changed_files
+      with:
+        files: coverage.svg
+
+    - name: Commit files
+      if: steps.changed_files.outputs.files_changed == 'true'
+      run: |
+        git config --local user.email "github-actions[bot]@users.noreply.github.com"
+        git config --local user.name "github-actions[bot]"
+        git add coverage.svg
+        git commit -m "Updated coverage.svg"
+
+    - name: Push changes
+      if: steps.changed_files.outputs.files_changed == 'true'
+      uses: ad-m/github-push-action@master
+      with:
+        github_token: ${{ secrets.github_token }}
+        branch: ${{ github.head_ref }}
+
+    - name: Coverage comment
+      id: coverage_comment
+      uses: ewjoachim/python-coverage-comment-action@v2
+      with:
+        GITHUB_TOKEN: ${{ github.token }}
+        VERBOSE: true
+
+    - name: Store Pull Request comment to be posted
+      uses: actions/upload-artifact@v2
+      if: steps.coverage_comment.outputs.COMMENT_FILE_WRITTEN == 'true'
+      with:
+        # If you use a different name, update COMMENT_ARTIFACT_NAME accordingly
+        name: python-coverage-comment-action
+        # If you use a different name, update COMMENT_FILENAME accordingly
+        path: python-coverage-comment-action.txt
+
+    - name: Teardown the test environment
+      shell: bash -l {0}
+      run: source setup/teardown_tests.sh

.github/workflows/coverage.yml

@@ -0,0 +1,25 @@
+name: Post coverage comment
+
+on:
+  workflow_run:
+    workflows: ["Coverage"]
+    types:
+      - completed
+
+jobs:
+  test:
+    name: Run tests & display coverage
+    runs-on: ubuntu-latest
+    if: github.event.workflow_run.event == 'pull_request' && github.event.workflow_run.conclusion == 'success'
+    steps:
+      # DO NOT run actions/checkout@v2 here, for securitity reasons
+      # For details, refer to https://securitylab.github.com/research/github-actions-preventing-pwn-requests/
+      - name: Post comment
+        uses: ewjoachim/python-coverage-comment-action@v2
+        with:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_PR_RUN_ID: ${{ github.event.workflow_run.id }}
+          VERBOSE: true
+          # Update those if you changed the default values:
+          # COMMENT_ARTIFACT_NAME: python-coverage-comment-action
+          # COMMENT_FILENAME: python-coverage-comment-action.txt

.gitignore

@@ -19,3 +19,5 @@ conf/**/*.json
 *.ipynb_checkpoints*
 
 *.secret
+
+.coverage

README.md

@@ -11,7 +11,7 @@ backend server - the phone apps are available in the [e-mission-phone
 repo](https://github.com/amplab/e-mission-phone)
 
 
-- **Master** [![master:test-with-docker](https://github.com/e-mission/e-mission-server/workflows/test-with-docker/badge.svg)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Amaster+workflow%3Atest-with-docker) [![master:ubuntu-only-test-with-manual-install](https://github.com/e-mission/e-mission-server/workflows/ubuntu-only-test-with-manual-install/badge.svg)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Amaster+workflow%3Aubuntu-only-test-with-manual-install) [![master:osx-ubuntu-manual-install](https://github.com/e-mission/e-mission-server/workflows/osx-ubuntu-manual-install/badge.svg)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Amaster+workflow%3Aosx-ubuntu-manual-install)
+- **Master** [![master:test-with-docker](https://github.com/e-mission/e-mission-server/workflows/test-with-docker/badge.svg)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Amaster+workflow%3Atest-with-docker) [![master:ubuntu-only-test-with-manual-install](https://github.com/e-mission/e-mission-server/workflows/ubuntu-only-test-with-manual-install/badge.svg)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Amaster+workflow%3Aubuntu-only-test-with-manual-install) [![master:osx-ubuntu-manual-install](https://github.com/e-mission/e-mission-server/workflows/osx-ubuntu-manual-install/badge.svg)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Amaster+workflow%3Aosx-ubuntu-manual-install) ![coverage badge](./coverage.svg)
 
 - **GIS branch:** [![master:ubuntu-only-test-with-manual-install](https://github.com/e-mission/e-mission-server/workflows/ubuntu-only-test-with-manual-install/badge.svg?branch=gis-based-mode-detection)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Agis-based-mode-detection+workflow%3Aubuntu-only-test-with-manual-install) [![osx-ubuntu-manual-install](https://github.com/e-mission/e-mission-server/workflows/osx-ubuntu-manual-install/badge.svg?branch=gis-based-mode-detection)](https://github.com/e-mission/e-mission-server/actions?query=branch%3Agis-based-mode-detection+workflow%3Aosx-ubuntu-manual-install)