Add a fluorescence spectroscopy data model.

README.md

@@ -15,6 +15,7 @@ Currently it offers workflows in the following areas:
     * infrared spectroscopy (FTIR, NIR, MIR)
     * raman spectroscopy (Raman)
   * ultraviolet–visible spectroscopy (UV/Vis)
+  * fluorescence spectroscopy (aka fluorimetry or spectrofluorometry)
 * molecular biology
   * real-time polymerase chain reaction (PCR)
 

chemclipse/features/org.eclipse.chemclipse.rcp.app.base.feature/feature.xml

@@ -63,10 +63,10 @@
    <plugin
          id="org.eclipse.chemclipse.model"
          version="0.0.0"/>
-         
+
    <plugin
          id="org.eclipse.chemclipse.model.ui"
-         version="0.0.0"/>          
+         version="0.0.0"/>
 
    <plugin
          id="org.eclipse.chemclipse.chromatogram.xxd.baseline.detector"
@@ -360,4 +360,16 @@
          id="org.eclipse.chemclipse.xxd.filter.ui"
          version="0.0.0"/>
 
-</feature>
+   <plugin
+         id="org.eclipse.chemclipse.fsd.converter"
+         version="0.0.0"/>
+
+   <plugin
+         id="org.eclipse.chemclipse.fsd.converter.ui"
+         version="0.0.0"/>
+
+   <plugin
+         id="org.eclipse.chemclipse.fsd.model"
+         version="0.0.0"/>
+
+</feature>

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/.classpath

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-17"/>
+	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
+	<classpathentry kind="src" path="src"/>
+	<classpathentry kind="output" path="bin"/>
+</classpath>

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/.gitignore

@@ -0,0 +1 @@
+/bin

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/.project

@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>org.eclipse.chemclipse.fsd.converter.ui</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.ManifestBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.SchemaBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.pde.PluginNature</nature>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+	</natures>
+</projectDescription>

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/.settings/org.eclipse.core.resources.prefs

@@ -0,0 +1,2 @@
+eclipse.preferences.version=1
+encoding/<project>=utf8

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/.settings/org.eclipse.jdt.core.prefs

@@ -0,0 +1,7 @@
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=17
+org.eclipse.jdt.core.compiler.compliance=17
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.source=17

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/META-INF/MANIFEST.MF

@@ -0,0 +1,22 @@
+Manifest-Version: 1.0
+Automatic-Module-Name: org.eclipse.chemclipse.wsd.converter.ui
+Bundle-ManifestVersion: 2
+Bundle-Name: FSD converter UI
+Bundle-SymbolicName: org.eclipse.chemclipse.fsd.converter.ui;singleton:=true
+Bundle-Version: 0.9.0.qualifier
+Bundle-Activator: org.eclipse.chemclipse.fsd.converter.ui.Activator
+Bundle-Vendor: ChemClipse
+Require-Bundle: org.eclipse.ui;bundle-version="3.207.0",
+ org.eclipse.core.runtime;bundle-version="3.32.0",
+ org.eclipse.chemclipse.converter;bundle-version="0.9.0",
+ org.eclipse.chemclipse.processing;bundle-version="0.9.0",
+ org.apache.commons.commons-io;bundle-version="2.17.0",
+ org.eclipse.chemclipse.logging;bundle-version="0.9.0",
+ org.eclipse.chemclipse.support.ui;bundle-version="0.9.0",
+ org.eclipse.chemclipse.converter.ui;bundle-version="0.9.0",
+ org.eclipse.chemclipse.processing.ui;bundle-version="0.9.0",
+ org.eclipse.chemclipse.fsd.model;bundle-version="0.9.0",
+ org.eclipse.chemclipse.fsd.converter;bundle-version="0.9.0"
+Bundle-RequiredExecutionEnvironment: JavaSE-17
+Bundle-ActivationPolicy: lazy
+Export-Package: org.eclipse.chemclipse.fsd.converter.ui.swt

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/build.properties

@@ -0,0 +1,5 @@
+source.. = src/
+output.. = bin/
+bin.includes = META-INF/,\
+               .,\
+               plugin.xml

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/plugin.xml

@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<?eclipse version="3.4"?>
+<plugin>
+   <extension
+         point="org.eclipse.ui.preferencePages">
+      <page
+            category="org.eclipse.chemclipse.converter.ui.converterPreferencePage"      
+            class="org.eclipse.chemclipse.fsd.converter.ui.preferences.PreferencePage"
+            id="org.eclipse.chemclipse.wsd.converter.ui.converterPreferencePage"
+            name="Converter WSD">
+      </page>
+   </extension>
+</plugin>

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/src/org/eclipse/chemclipse/fsd/converter/ui/Activator.java

@@ -0,0 +1,60 @@
+/*******************************************************************************
+ * Copyright (c) 2013, 2018 Lablicate GmbH.
+ * 
+ * All rights reserved.
+ * This program and the accompanying materials are made available under the
+ * terms of the Eclipse Public License v1.0 which accompanies this distribution,
+ * and is available at http://www.eclipse.org/legal/epl-v10.html
+ * 
+ * Contributors:
+ * Dr. Philip Wenig - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.fsd.converter.ui;
+
+import org.eclipse.ui.plugin.AbstractUIPlugin;
+import org.osgi.framework.BundleContext;
+
+/**
+ * The activator class controls the plug-in life cycle
+ */
+public class Activator extends AbstractUIPlugin {
+
+	// The shared instance
+	private static Activator plugin;
+
+	/**
+	 * The constructor
+	 */
+	public Activator() {
+	}
+
+	/*
+	 * (non-Javadoc)
+	 * @see org.eclipse.ui.plugin.AbstractUIPlugin#start(org.osgi.framework.BundleContext)
+	 */
+	public void start(BundleContext context) throws Exception {
+
+		super.start(context);
+		plugin = this;
+	}
+
+	/*
+	 * (non-Javadoc)
+	 * @see org.eclipse.ui.plugin.AbstractUIPlugin#stop(org.osgi.framework.BundleContext)
+	 */
+	public void stop(BundleContext context) throws Exception {
+
+		plugin = null;
+		super.stop(context);
+	}
+
+	/**
+	 * Returns the shared instance
+	 * 
+	 * @return the shared instance
+	 */
+	public static Activator getDefault() {
+
+		return plugin;
+	}
+}

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/src/org/eclipse/chemclipse/fsd/converter/ui/l10n/FluorescenceSpectroscopy.java

@@ -0,0 +1,29 @@
+/*******************************************************************************
+ * Copyright (c) 2025 Lablicate GmbH.
+ * 
+ * All rights reserved.
+ * This program and the accompanying materials are made available under the
+ * terms of the Eclipse Public License v1.0 which accompanies this distribution,
+ * and is available at http://www.eclipse.org/legal/epl-v10.html
+ * 
+ * Contributors:
+ * Matthias Mailänder - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.fsd.converter.ui.l10n;
+
+import org.eclipse.osgi.util.NLS;
+
+public class FluorescenceSpectroscopy extends NLS {
+
+	private static final String BUNDLE_NAME = "org.eclipse.chemclipse.fsd.converter.ui.l10n.messages"; //$NON-NLS-1$
+	//
+	public static String saveFluorescence;
+	//
+	static {
+		NLS.initializeMessages(BUNDLE_NAME, FluorescenceSpectroscopy.class);
+	}
+
+	private FluorescenceSpectroscopy() {
+
+	}
+}

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/src/org/eclipse/chemclipse/fsd/converter/ui/l10n/messages.properties

@@ -0,0 +1 @@
+saveFluorescence=Save fluorescence spectrum

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/src/org/eclipse/chemclipse/fsd/converter/ui/l10n/messages_de.properties

@@ -0,0 +1 @@
+saveFluorescence=Speichere Fluoreszenz-Spektrum

chemclipse/plugins/org.eclipse.chemclipse.fsd.converter.ui/src/org/eclipse/chemclipse/fsd/converter/ui/preferences/PreferencePage.java

@@ -0,0 +1,38 @@
+/*******************************************************************************
+ * Copyright (c) 2013, 2018 Lablicate GmbH.
+ * 
+ * All rights reserved. This
+ * program and the accompanying materials are made available under the terms of
+ * the Eclipse Public License v1.0 which accompanies this distribution, and is
+ * available at http://www.eclipse.org/legal/epl-v10.html
+ * 
+ * Contributors:
+ * Dr. Philip Wenig - initial API and implementation
+ *******************************************************************************/
+package org.eclipse.chemclipse.fsd.converter.ui.preferences;
+
+import org.eclipse.chemclipse.fsd.converter.ui.Activator;
+import org.eclipse.jface.preference.FieldEditorPreferencePage;
+import org.eclipse.ui.IWorkbench;
+import org.eclipse.ui.IWorkbenchPreferencePage;
+
+public class PreferencePage extends FieldEditorPreferencePage implements IWorkbenchPreferencePage {
+
+	public PreferencePage() {
+
+		super(GRID);
+		setPreferenceStore(Activator.getDefault().getPreferenceStore());
+		setTitle("FSD Converter");
+		setDescription("Fluorescence Spectroscopy Converter");
+	}
+
+	@Override
+	protected void createFieldEditors() {
+
+	}
+
+	@Override
+	public void init(IWorkbench workbench) {
+
+	}
+}