target-generation #197
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| schedule: | |
| - cron: '0 4 * * *' | |
| workflow_dispatch: | |
| name: target-generation | |
| jobs: | |
| phenology: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_SUBMISSIONS }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_SUBMISSIONS }} | |
| OSN_KEY: ${{ secrets.OSN_KEY }} | |
| OSN_SECRET: ${{ secrets.OSN_SECRET }} | |
| container: rocker/geospatial:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Generate targets | |
| shell: Rscript {0} | |
| run: | | |
| install.packages("RCurl") | |
| source("targets/phenology_targets.R") | |
| beetles: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_SUBMISSIONS }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_SUBMISSIONS }} | |
| OSN_KEY: ${{ secrets.OSN_KEY }} | |
| OSN_SECRET: ${{ secrets.OSN_SECRET }} | |
| NEON_TOKEN: ${{ secrets.NEON_TOKEN }} | |
| container: rocker/geospatial:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Generate targets | |
| shell: Rscript {0} | |
| run: | | |
| install.packages(c("neonstore","RCurl","duckdbfs","ISOweek")) | |
| source("targets/beetles_targets.R") | |
| ticks: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_SUBMISSIONS }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_SUBMISSIONS }} | |
| OSN_KEY: ${{ secrets.OSN_KEY }} | |
| OSN_SECRET: ${{ secrets.OSN_SECRET }} | |
| NEON_TOKEN: ${{ secrets.NEON_TOKEN }} | |
| container: rocker/geospatial:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Generate targets | |
| shell: Rscript {0} | |
| run: | | |
| install.packages(c("neonstore","RCurl","duckdbfs","ISOweek")) | |
| source("targets/ticks_targets.R") | |
| - name: Healthcheck | |
| run: | | |
| curl -m 10 --retry 5 https://hc-ping.com/95d7869d-538f-4145-9d1e-e6655320066d |