Rename Assembly.Rmd to Assembly.md #59
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # github docs on actions https://docs.github.com/en/actions/learn-github-actions/understanding-github-actions | |
| # borrowed caching and dependency install from https://github.com/ropenscilabs/statistical-software-review-book/blob/main/.github/workflows/main.yml | |
| on: | |
| push: | |
| branches: [main, master] | |
| name: bookdown | |
| jobs: | |
| bookdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| AUTHOR: ${{ github.event.pusher.name }} | |
| steps: | |
| # check for more recent versions | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| # potentially drop to keep from locking package versions | |
| # look into how this impacts build | |
| - uses: r-lib/actions/setup-renv@v1 | |
| - name: Install libgit2 | |
| run: sudo apt install libgit2-dev | |
| - name: Cache bookdown results | |
| uses: actions/cache@v2 | |
| with: | |
| path: _bookdown_files | |
| key: bookdown-${{ hashFiles('**/*Rmd') }} | |
| restore-keys: bookdown- | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: r-${{ hashFiles('DESCRIPTION') }} | |
| restore-keys: r- | |
| - name: Install dependencies | |
| run: Rscript -e 'install.packages("remotes")' -e 'remotes::install_deps(dependencies = TRUE)' | |
| # should we build bookdown::gitbook vs default? | |
| - name: Build site | |
| run: Rscript -e 'bookdown::render_book("index.Rmd", quiet = TRUE)' | |
| # generate pdf? see R open sci | |
| # Maelle - bootstrap 4 - nicer format (change output format ) | |
| # see hand coded examples from Mark - | |
| - name: Deploy to GitHub pages 🚀 | |
| uses: JamesIves/[email protected] | |
| with: | |
| branch: gh-pages | |
| folder: _book #added folder but unclear if it will still be missing |