Skip to content

Commit

Permalink
Speed up outbreak history calculation by more than 50x by switching t…
Browse files Browse the repository at this point in the history 
…o Rfast matrix math and only calculating distances for each outbreak one time instead of re-calculating the matrix every day. Calculating the entire history in serial now takes ~5 hours on an M1 mac.
  • Loading branch information
@n8layman
n8layman committed Jul 26, 2024
1 parent bd55210 commit 5bc736e
Show file tree
Hide file tree
Showing 42 changed files with 418 additions and 319 deletions.
230 changes: 0 additions & 230 deletions R/calc_outbreak_history.R
View file

This file was deleted.

Loading

0 comments on commit 5bc736e

Please sign in to comment.