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New static downloads #76

Merged
merged 92 commits into from
Jul 23, 2024
Merged

New static downloads #76

merged 92 commits into from
Jul 23, 2024

Commits on Aug 18, 2023

  1. rebase

    @wbagge
    wbagge committed Aug 18, 2023
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Commits on Aug 24, 2023

  1. commit soil download

    @wbagge
    wbagge committed Aug 24, 2023
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Commits on Oct 20, 2023

  1. saving progress

    @wbagge
    wbagge committed Oct 20, 2023
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Commits on Nov 3, 2023

  1. elevation download and processing

    @wbagge
    wbagge committed Nov 3, 2023
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  2. changes to soil preprocessing

    @wbagge
    wbagge committed Nov 3, 2023
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Commits on Nov 21, 2023

  1. first pass at building augmented dataset. getting error that some (no… 

    …t all) of the forecast anomaly data seems to be invalid ("Couldn't deserialize thrift: TProtocolException: Invalid data")
    @emmamendelsohn
    emmamendelsohn committed Nov 21, 2023
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Commits on Nov 27, 2023

  1. closes #68 but still throws error on join "Last error: IOError: Could… 

    …n't deserialize thrift: don't know what type:"
    @emmamendelsohn
    emmamendelsohn committed Nov 27, 2023
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Commits on Dec 5, 2023

  1. regenerated forecast anomaly files with arrow 14.0.0.2 and seems to b… 

    …e working
    @emmamendelsohn
    emmamendelsohn committed Dec 5, 2023
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  2. tar_prune

    @emmamendelsohn
    emmamendelsohn committed Dec 5, 2023
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  3. snapshot renv

    @emmamendelsohn
    emmamendelsohn committed Dec 5, 2023
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Commits on Dec 8, 2023

  1. rerunning forecast anomalies to replace NAs in files

    @emmamendelsohn
    emmamendelsohn committed Dec 8, 2023
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Commits on Dec 11, 2023

  1. finish forecast anomaly regeneration

    @emmamendelsohn
    emmamendelsohn committed Dec 11, 2023
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Commits on Dec 15, 2023

  1. complete anomaly dataset

    @emmamendelsohn
    emmamendelsohn committed Dec 15, 2023
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  2. copy .rprofile from repel

    @emmamendelsohn
    emmamendelsohn committed Dec 15, 2023
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  3. add .Renvignore

    @emmamendelsohn
    emmamendelsohn committed Dec 15, 2023
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Commits on Dec 18, 2023

  1. first working shiny version

    @emmamendelsohn
    emmamendelsohn committed Dec 18, 2023
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  2. working side by side maps with ndvi and ndvi anomalies

    @emmamendelsohn
    emmamendelsohn committed Dec 18, 2023
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  3. working slider bar

    @emmamendelsohn
    emmamendelsohn committed Dec 18, 2023
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  4. some aesthetic improvements

    @emmamendelsohn
    emmamendelsohn committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. remove raw data - using anomalies only

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  2. thee anomaly lags

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  3. add labels

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  4. add dataset toggle

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  5. working temperature map

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  6. working function to create maps

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  7. this works

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  8. works for temp too

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  9. fix labels and color scale

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  10. add dynamic text

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  11. improve dynamic rendering

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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  12. more code improvements

    @emmamendelsohn
    emmamendelsohn committed Dec 19, 2023
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Commits on Dec 20, 2023

  1. add other weather datasets

    @emmamendelsohn
    emmamendelsohn committed Dec 20, 2023
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  2. fix color scales

    @emmamendelsohn
    emmamendelsohn committed Dec 20, 2023
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  3. use augmented data instead of invidual anomaly sets

    @emmamendelsohn
    emmamendelsohn committed Dec 20, 2023
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  4. tweaks

    @emmamendelsohn
    emmamendelsohn committed Dec 20, 2023
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  5. add forecasts but the layout is incorrect

    @emmamendelsohn
    emmamendelsohn committed Dec 20, 2023
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  6. small tweak

    @emmamendelsohn
    emmamendelsohn committed Dec 20, 2023
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  7. fix typo

    @emmamendelsohn
    emmamendelsohn committed Dec 20, 2023
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Commits on Dec 28, 2023

  1. saving prgress

    @wbagge
    wbagge committed Dec 28, 2023
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Commits on Dec 29, 2023

  1. dynamic UI works

    @emmamendelsohn
    emmamendelsohn committed Dec 29, 2023
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  2. script to download augmented data from aws

    @emmamendelsohn
    emmamendelsohn committed Dec 29, 2023
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  3. this works to functionalize leaflet output but throws quick error bef… 

    …ore working
    @emmamendelsohn
    emmamendelsohn committed Dec 29, 2023
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  4. rename function

    @emmamendelsohn
    emmamendelsohn committed Dec 29, 2023
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  5. separate tabs for forecasted and recorded data

    @emmamendelsohn
    emmamendelsohn committed Dec 29, 2023
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  6. add todo notes

    @emmamendelsohn
    emmamendelsohn committed Dec 29, 2023
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Commits on Dec 30, 2023

  1. switch from tabs to radio buttons

    @emmamendelsohn
    emmamendelsohn committed Dec 30, 2023
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Commits on Jan 3, 2024

  1. create target for comparison of validation/forecast data against reco… 

    …rded data
    @emmamendelsohn
    emmamendelsohn committed Jan 3, 2024
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Commits on Jan 5, 2024

  1. run forecast anomaly validation

    @emmamendelsohn
    emmamendelsohn committed Jan 5, 2024
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  2. add select choice boxes - not yet connected

    @emmamendelsohn
    emmamendelsohn committed Jan 5, 2024
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  3. yay dynamic UI for maps no more error loading messages

    @emmamendelsohn
    emmamendelsohn committed Jan 5, 2024
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  4. add dynamic tags

    @emmamendelsohn
    emmamendelsohn committed Jan 5, 2024
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  5. cleanup, fix width

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    emmamendelsohn committed Jan 5, 2024
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Commits on Jan 12, 2024

  1. get dynamic tags working

    @emmamendelsohn
    emmamendelsohn committed Jan 12, 2024
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  2. useful script for testing the code within the app

    @emmamendelsohn
    emmamendelsohn committed Jan 12, 2024
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  3. first pass at displaying comparisons

    @emmamendelsohn
    emmamendelsohn committed Jan 12, 2024
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  4. working app with TODO list

    @emmamendelsohn
    emmamendelsohn committed Jan 12, 2024
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  5. quick code cleanup

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    emmamendelsohn committed Jan 12, 2024
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Commits on Feb 2, 2024

  1. Merge branch 'main' into feature/augment

    @emmamendelsohn
    emmamendelsohn authored Feb 2, 2024
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  2. Merge pull request #74 from ecohealthalliance/feature/augment 

    Feature/augment
    @emmamendelsohn
    emmamendelsohn authored Feb 2, 2024
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  3. Merge pull request #80 from ecohealthalliance/feature/data-viz 

    Feature/data viz
    @emmamendelsohn
    emmamendelsohn authored Feb 2, 2024
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  4. filter augmented data to South Africa

    @emmamendelsohn
    emmamendelsohn committed Feb 2, 2024
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  5. Take 2 - doing spatial aggregation by district at same time as filter… 

    …ing for RSA
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    emmamendelsohn committed Feb 2, 2024
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Commits on Mar 4, 2024

  1. Merge pull request #81 from ecohealthalliance/feature/rsa-data 

    RSA spatial aggregation
    @emmamendelsohn
    emmamendelsohn authored Mar 4, 2024
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  2. full run for spatial aggregation

    @emmamendelsohn
    emmamendelsohn committed Mar 4, 2024
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Commits on Jun 4, 2024

  1. Add 1 git-crypt collaborator 

    New collaborators:

	5CD24532 Nathan Layman <[email protected]>
    @noamross
    noamross committed Jun 4, 2024
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  2. remove .gitkeep

    @n8layman
    n8layman committed Jun 4, 2024
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Commits on Jun 24, 2024

  1. rebase

    @wbagge @noamross
    wbagge authored and noamross committed Jun 24, 2024
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  2. commit soil download

    @wbagge @noamross
    wbagge authored and noamross committed Jun 24, 2024
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  3. saving progress

    @wbagge @noamross
    wbagge authored and noamross committed Jun 24, 2024
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  4. elevation download and processing

    @wbagge @noamross
    wbagge authored and noamross committed Jun 24, 2024
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  5. changes to soil preprocessing

    @wbagge @noamross
    wbagge authored and noamross committed Jun 24, 2024
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  6. saving prgress

    @wbagge @noamross
    wbagge authored and noamross committed Jun 24, 2024
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  7. Finish rebase 

    Merge branch 'new_static_downloads' of github.com:ecohealthalliance/open-rvfcast into new_static_downloads

# Conflicts:
#	_targets.R
    @noamross
    noamross committed Jun 24, 2024
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  8. Testing and taking notes on static pipeline

    @n8layman
    n8layman committed Jun 24, 2024
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Commits on Jun 26, 2024

  1. Update gitignore

    @n8layman
    n8layman committed Jun 26, 2024
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  2. Capture progress on working through static layer pipeline

    @n8layman
    n8layman committed Jun 26, 2024
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  3. Add interim outbreak history function

    @noamross
    noamross committed Jun 26, 2024
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  4. Merge remote-tracking branch 'origin/new_static_downloads' into new_s… 

    …tatic_downloads
    @noamross
    noamross committed Jun 26, 2024
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  5. Work on adding in outbreak histories. Currently incomplete

    @n8layman
    n8layman committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. Work on calc_outbreak_history. Remove circle geometry and define max … 

    …distance allowed in distance matrix.
    @n8layman
    n8layman committed Jun 27, 2024
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Commits on Jul 16, 2024

  1. Load targets in .Rprofile for interactive sessions only

    @n8layman
    n8layman committed Jul 16, 2024
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  2. Comment out orphaned target cache_aws_branched_target

    @n8layman
    n8layman committed Jul 16, 2024
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  3. Run static_targets till failure

    @n8layman
    n8layman committed Jul 16, 2024
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  4. Add note on where to pick back up with slope_aspect download

    @n8layman
    n8layman committed Jul 16, 2024
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Commits on Jul 20, 2024

  1. Split aspect and slope into re-usable get_remote_rasters function and… 

    … change from super fine resolution srtm source to copernicus 90m resolution accessed through the CopernicusDEM package
    @n8layman
    n8layman committed Jul 20, 2024
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  2. add in bioclim and landcover data

    @n8layman
    n8layman committed Jul 20, 2024
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  3. Finish statics except prior exposure to disease

    @n8layman
    n8layman committed Jul 20, 2024
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  4. Start on calc_outbreak_history

    @n8layman
    n8layman committed Jul 20, 2024
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Commits on Jul 21, 2024

  1. Add daily outbreak history for both old and recent outbreaks

    @n8layman
    n8layman committed Jul 21, 2024
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Commits on Jul 22, 2024

  1. Finish static variables and outbreak history

    @n8layman
    n8layman committed Jul 22, 2024
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  2. Add animations

    @n8layman
    n8layman committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. Update animation

    @n8layman
    n8layman committed Jul 23, 2024
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