Update to not use paired on t.test #263
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| on: | |
| push: | |
| branches: main | |
| env: | |
| RENV_PATHS_ROOT: ~/.cache/R/renv | |
| name: Build Site | |
| jobs: | |
| quarto: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout project | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install libgit and other linux packages | |
| run: | | |
| sudo apt-get install libgit2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev | |
| - name: Install renv from github | |
| uses: r-lib/actions/setup-renv@v2 | |
| - name: Cache packages | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.RENV_PATHS_ROOT }} | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Restore packages | |
| shell: Rscript {0} | |
| run: | | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv") | |
| renv::restore() | |
| # - name: Query dependencies | |
| # run: | | |
| # install.packages("remotes") | |
| # saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2) | |
| # shell: Rscript {0} | |
| # - name: Install system dependencies on Linux | |
| # if: runner.os == 'Linux' | |
| # run: | | |
| # while read -r cmd | |
| # do | |
| # eval sudo $cmd | |
| # done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "18.04"))') | |
| - name: Install Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| #- name: Install dependencies | |
| # run: | | |
| # remotes::install_deps(dependencies = TRUE) | |
| # shell: Rscript {0} | |
| #- name: Cache R packages | |
| # if: runner.os != 'Windows' | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: ${{ env.R_LIBS_USER }} | |
| # key: ${{ env.cache-version }}-${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }} | |
| # restore-keys: ${{ env.cache-version }}-${{ runner.os }}-r-${{ matrix.config.r }}- | |
| # - name: Build site | |
| # run: quarto::quarto_render() | |
| # shell: Rscript {0} | |
| - name: Render and Publish | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |