rewrite workflow w/ sudo #2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Build Pages | |
on: | |
push: | |
branches: | |
- master # or your preferred branch | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.8 | |
- name: Install Dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install nbconvert | |
sudo apt-get install -y pandoc | |
sudo apt-get install -y r-base | |
sudo Rscript -e "install.packages('remotes', repos = 'http://cran.rstudio.com/')" | |
sudo Rscript -e "install.packages('withr', repos = 'http://cran.rstudio.com/')" | |
sudo Rscript -e "withr::with_libpaths(new = '/usr/local/lib/R/site-library', remotes::install_github('rstudio/rmarkdown'))" | |
- name: Convert Notebooks and Rmds | |
run: | | |
mkdir dist | |
for notebook in submissions/**/*.ipynb; do | |
jupyter nbconvert --to html $notebook --output-dir dist | |
done | |
for rmd in submissions/**/*.Rmd; do | |
sudo Rscript -e "withr::with_libpaths(new = '/usr/local/lib/R/site-library', rmarkdown::render('$rmd', output_dir = 'dist'))" | |
done |