Bump the python-packages group across 1 directory with 9 updates (#348)

* Bump the python-packages group across 1 directory with 9 updates

Bumps the python-packages group with 9 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [h5py](https://github.com/h5py/h5py) | `3.11.0` | `3.12.1` |
| [xmltodict](https://github.com/martinblech/xmltodict) | `0.13.0` | `0.14.2` |
| [ruff](https://github.com/astral-sh/ruff) | `0.4.8` | `0.9.2` |
| [mypy](https://github.com/python/mypy) | `1.10.0` | `1.14.1` |
| [types-requests](https://github.com/python/typeshed) | `2.32.0.20240914` | `2.32.0.20241016` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.2.2` | `8.3.4` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `5.0.0` | `6.0.0` |
| [fastapi[all]](https://github.com/fastapi/fastapi) | `0.111.1` | `0.115.6` |
| [pydantic](https://github.com/pydantic/pydantic) | `2.8.2` | `2.10.5` |



Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)

Updates `xmltodict` from 0.13.0 to 0.14.2
- [Changelog](https://github.com/martinblech/xmltodict/blob/master/CHANGELOG.md)
- [Commits](martinblech/xmltodict@v0.13.0...v0.14.2)

Updates `ruff` from 0.4.8 to 0.9.2
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.4.8...0.9.2)

Updates `mypy` from 1.10.0 to 1.14.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.10.0...v1.14.1)

Updates `types-requests` from 2.32.0.20240914 to 2.32.0.20241016
- [Commits](https://github.com/python/typeshed/commits)

Updates `pytest` from 8.2.2 to 8.3.4
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.2.2...8.3.4)

Updates `pytest-cov` from 5.0.0 to 6.0.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v5.0.0...v6.0.0)

Updates `fastapi[all]` from 0.111.1 to 0.115.6
- [Release notes](https://github.com/fastapi/fastapi/releases)
- [Commits](fastapi/fastapi@0.111.1...0.115.6)

Updates `pydantic` from 2.8.2 to 2.10.5
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.8.2...v2.10.5)

---
updated-dependencies:
- dependency-name: h5py
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: xmltodict
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: ruff
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: types-requests
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: pytest-cov
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: fastapi[all]
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: pydantic
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <[email protected]>

* Formatting and linting commit

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: github-actions <[email protected]>

pyproject.toml

@@ -5,8 +5,8 @@ version = "0.0.1"
 requires-python = ">= 3.11"
 dependencies = [
     "pika==1.3.2",
-    "h5py==3.11.0",
-    "xmltodict==0.13.0",
+    "h5py==3.12.1",
+    "xmltodict==0.14.2",
     "requests==2.32.3"
 ]
 
@@ -19,20 +19,20 @@ run-detection = "rundetection.run_detection:main"
 
 [project.optional-dependencies]
 formatting = [
-    "ruff==0.4.8",
-    "mypy==1.10.0",
+    "ruff==0.9.2",
+    "mypy==1.14.1",
     "run-detection[test]",
-    "types-requests==2.32.0.20240914",
+    "types-requests==2.32.0.20241016",
     "types-xmltodict==0.14.0.20241009"
 ]
 
 test = [
-    "pytest==8.2.2",
-    "pytest-cov==5.0.0",
+    "pytest==8.3.4",
+    "pytest-cov==6.0.0",
     "requests==2.32.3",
     "pytest-random-order==1.1.1",
-    "fastapi[all]==0.111.1",
-    "pydantic==2.8.2",
+    "fastapi[all]==0.115.6",
+    "pydantic==2.10.5",
 ]
 
 dev = [

test/ingestion/test_extracts.py

@@ -20,7 +20,7 @@
 from rundetection.job_requests import JobRequest
 
 
-@pytest.fixture()
+@pytest.fixture
 def job_request():
     """job_request fixture"""
     return JobRequest(

test/rules/test_common_rules.py

@@ -12,7 +12,7 @@
 from rundetection.rules.common_rules import CheckIfScatterSANS, EnabledRule, SansSliceWavs, is_y_within_5_percent_of_x
 
 
-@pytest.fixture()
+@pytest.fixture
 def job_request():
     """
     job_request Fixture

test/rules/test_iris_rules.py

@@ -6,7 +6,7 @@
 from rundetection.rules.iris_rules import IrisCalibrationRule, IrisReductionRule
 
 
-@pytest.fixture()
+@pytest.fixture
 def job_request():
     """
     job request fixture
@@ -28,13 +28,13 @@ def job_request():
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def reflection_rule():
     """Analyser rule fixture"""
     return IrisCalibrationRule({"002": "105275", "004": "105276"})
 
 
-@pytest.fixture()
+@pytest.fixture
 def iris_mode_rule():
     """Reduction mode rule fixture"""
     return IrisReductionRule(True)

test/rules/test_mari_rules.py

@@ -20,7 +20,7 @@ def _working_directory_fix():
         os.chdir(current_working_directory / ".." / "..")
 
 
-@pytest.fixture()
+@pytest.fixture
 def job_request():
     """
     job request fixture
@@ -42,7 +42,7 @@ def job_request():
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def mari_stitch_rule_true():
     """
     stitch rule fixture for true
@@ -51,7 +51,7 @@ def mari_stitch_rule_true():
     return MariStitchRule(value=True)
 
 
-@pytest.fixture()
+@pytest.fixture
 def mari_stitch_rule_false():
     """
     Stitch rule fixture for false

test/rules/test_osiris_rules.py

@@ -20,7 +20,7 @@
 from rundetection.rules.rule import Rule
 
 
-@pytest.fixture()
+@pytest.fixture
 def job_request():
     """
     job request fixture
@@ -42,13 +42,13 @@ def job_request():
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def reflection_rule():
     """Analyser rule fixture"""
     return OsirisReflectionCalibrationRule({"002": "00148587", "004": "00148587"})
 
 
-@pytest.fixture()
+@pytest.fixture
 def osiris_mode_rule():
     """Reduction mode rule fixture"""
     return OsirisReductionModeRule(True)

test/rules/test_tosca_rules.py

@@ -11,7 +11,7 @@
 from rundetection.rules.common_rules import MolSpecStitchRule
 
 
-@pytest.fixture()
+@pytest.fixture
 def job_request():
     """job_request fixture"""
     return JobRequest(

test/test_specifications.py

@@ -19,7 +19,7 @@
 from rundetection.specifications import InstrumentSpecification
 
 
-@pytest.fixture()
+@pytest.fixture
 def job_request():
     """
     JobRequest fixture
@@ -28,7 +28,7 @@ def job_request():
     return JobRequest(1, "larmor", "1", "1", Path("/archive/larmor/1/1,nxs"), "start time", "end time", 1, 1, "user")
 
 
-@pytest.fixture()
+@pytest.fixture
 @patch("rundetection.specifications.InstrumentSpecification._load_rules_from_api")
 def specification(_) -> InstrumentSpecification:
     """
@@ -46,7 +46,7 @@ def _set_api_key() -> None:
     os.environ["FIA_API_API_KEY"] = "shh"
 
 
-@pytest.fixture()
+@pytest.fixture
 def _working_directory_fix():
     # Set dir to repo root for purposes of the test.
     current_working_directory = Path.cwd()