This is a scratch repo for the OME-NGFF Hackathon Zurich 2024
required cellpose version: 2.2.1
Input:
Shape: (279, 2, 91, 554, 928)
Size: ~50 gb
Example for otsu segmentation:
n_workers = 4
threads_per_worker = 1
region_shape = (1, 1, 91, 554, 928)
Output chunks: (1, 1, 48, 128, 128)
Read-process-write took roughly 4-5 min.
Example output for cellpose segmentation:
Shape: (279, 2, 91, 317, 325)
Size: ~10 gb
