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@fmi-faim

FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

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  1. fmi-ij2-plugins fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    Java 7 3

  2. visiview-scripts visiview-scripts Public

    A collection of macros for the VisiView acquisition software

    Python 1 1

  3. imagej-scripts imagej-scripts Public

    Python 1

Repositories

Showing 10 of 46 repositories
  • ipa-project-template Public

    Copier template for image processing & analysis projects.

    fmi-faim/ipa-project-template’s past year of commit activity
    Jinja 3 MIT 2 7 0 Updated Jul 3, 2024
  • faim-ipa Public

    A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

    fmi-faim/faim-ipa’s past year of commit activity
    Python 7 BSD-3-Clause 6 23 3 Updated Jul 3, 2024
  • napari-save-transformed Public

    Save image layers with their transformation applied

    fmi-faim/napari-save-transformed’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jul 2, 2024
  • faim-wako-searchfirst Public

    Python scripts for the SearchFirst option in Wako Software Suite

    fmi-faim/faim-wako-searchfirst’s past year of commit activity
    Python 0 MIT 0 8 4 Updated Jul 2, 2024
  • rattler-elastix Public

    Conda recipe for elastix

    fmi-faim/rattler-elastix’s past year of commit activity
    Batchfile 0 0 0 0 Updated Jun 28, 2024
  • eicm Public

    Functions to estimate illumination correction matrices from reference illumination samples.

    fmi-faim/eicm’s past year of commit activity
    Python 1 1 2 1 Updated Jun 17, 2024
  • napari-psf-analysis Public

    A napari plugin to analysis point spread functions.

    fmi-faim/napari-psf-analysis’s past year of commit activity
    Python 8 BSD-3-Clause 3 5 (1 issue needs help) 1 Updated Jun 4, 2024
  • fmi-knime-update-site Public

    KNIME Extensions for Image Processing at the FMI Basel

    fmi-faim/fmi-knime-update-site’s past year of commit activity
    Shell 0 3 1 0 Updated May 3, 2024
  • fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    fmi-faim/fmi-ij2-plugins’s past year of commit activity
    Java 7 LGPL-3.0 3 3 0 Updated May 2, 2024
  • pixi-psf Public

    Pixi project to run napari-psf-analysis

    fmi-faim/pixi-psf’s past year of commit activity
    0 0 0 0 Updated Apr 29, 2024
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