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focyte/README.md

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  • Hi, I’m John @Focyte
  • A research scientist with 15+ years experience in the fields of cancer, immunology, and RNA biology
  • I use R and Python to process and analyse genomic data
  • Using Linux Command Line tools and Bash scripting I have worked with Next Generation Sequencing (NGS) pipeliens
  • Through collaborations with data scientists I have also tried some feature selection methods and machine learning

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  1. ID_Conversion ID_Conversion Public

    Three R scripts for gene-related data conversion and annotation

    R

  2. GSEA GSEA Public

    Scripts to perform gene set enrichment analysis (GSEA)

    R

  3. RNA_Seq RNA_Seq Public

    Pipelines for analysis of RNA sequencing data using bash scripting of command line tools, Python and R scripts

    Shell 2

  4. ATACseq ATACseq Public

    Pipeline for analysing ATAC-seq data from raw fastq files to called genomic peaks

    Shell