v2.6.1

Bug fixes in SVLEN for symbolic INS

v2.6.0

Full Changelog: v2.5.3...v2.6.0

v2.5.3

Full Changelog: v2.5.2...v2.5.3

v2.5.2

Sniffles requires python to be==3.10.15 given a constrain of edlib (py)

v2.5

What's Changed

• Improved detection of large Deletion and Duplication SVs (>50kb) by manteiners
• Improved implementation of combine for large datasets by manteiners
• fix parallelism for OSX/MacOS by @yfarjoun in #499
• Optionally emit SV lengths by @yfarjoun in #504
• Update vcf.py to have correct END value for DEL SVTYPE by @gaberudy in #519
• Add check for empty list by @bbimber in #521

Full Changelog: v2.4...v2.5

v2.4

Full Changelog: v2.3.3...v2.4

v2.3.3

Bugfixes to make sure sniffles shuts down properly.

Full Changelog: v2.3.2...v2.3.3

v2.3.2

manage the Sniffles2Exit exception in order to not have --version and --help trowing an exit code 1 which made conda not accept sniffles v2.3.1

Full Changelog: v2.3.1...v2.3.2

Sniffles v2.3.1

Bug fixes that prevented pip installation to work and thus conda was unable to build and release
Full Changelog: v2.3...v2.3.1

Sniffles v2.3

This release includes new features for multisample calling and some restructuring of the codebase to facilitate easier development in the future.

New features:

• Multisample calling for large input sets
  Sniffles multiprocessing code has undergone a major rewrite with focus of enabling multisample calling for a large number of input files. To support this, the new optional dependency psutil can be installed along with sniffles.

• Using alignments for multisample calling
  Alignments can be used to improve separation of variants in multisample calling. This uses the new optional dependency edlib and can be tweaked with the new argument --combine-pctseq defaulting to 0.7.

Required Python version has been updated to Python 3.10.