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WIP: POC of a tool to re-pick primary alignments. #1012

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POC of a tool to re-pick primary alignments.

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WIP: POC of a tool to re-pick primary alignments. #1012

POC of a tool to re-pick primary alignments.
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Codecov / codecov/patch failed Sep 23, 2024 in 1s

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0.00% of diff hit (target 80.00%)

Annotations

Check warning on line 44 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L42-L44 

Added lines #L42 - L44 were not covered by tests

Check warning on line 49 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L46-L49 

Added lines #L46 - L49 were not covered by tests

Check warning on line 53 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L52-L53 

Added lines #L52 - L53 were not covered by tests

Check warning on line 57 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L56-L57 

Added lines #L56 - L57 were not covered by tests

Check warning on line 63 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L62-L63 

Added lines #L62 - L63 were not covered by tests

Check warning on line 67 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L65-L67 

Added lines #L65 - L67 were not covered by tests

Check warning on line 70 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L69-L70 

Added lines #L69 - L70 were not covered by tests

Check warning on line 75 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L73-L75 

Added lines #L73 - L75 were not covered by tests

Check warning on line 77 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L77 

Added line #L77 was not covered by tests

Check warning on line 83 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L80-L83 

Added lines #L80 - L83 were not covered by tests

Check warning on line 91 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L91 

Added line #L91 was not covered by tests

Check warning on line 98 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L96-L98 

Added lines #L96 - L98 were not covered by tests
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