Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

GroupReadsByUmi may fail when marking duplicates including secondary/supplementary reads #964

Open
wants to merge 6 commits into
base: main
Choose a base branch
from

one more

bf2dba3
Select commit
Loading
Failed to load commit list.
Open

GroupReadsByUmi may fail when marking duplicates including secondary/supplementary reads #964

one more
bf2dba3
Select commit
Loading
Failed to load commit list.
Codecov / codecov/patch succeeded Feb 5, 2025 in 1s

93.54% of diff hit (target 80.00%)

View this Pull Request on Codecov

93.54% of diff hit (target 80.00%)

Annotations

Check warning on line 53 in src/main/scala/com/fulcrumgenomics/bam/Bams.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/Bams.scala#L53 

Added line #L53 was not covered by tests

Check warning on line 71 in src/main/scala/com/fulcrumgenomics/bam/Bams.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/Bams.scala#L71 

Added line #L71 was not covered by tests

Check warning on line 183 in src/main/scala/com/fulcrumgenomics/bam/api/SamOrder.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/api/SamOrder.scala#L183 

Added line #L183 was not covered by tests

Check warning on line 191 in src/main/scala/com/fulcrumgenomics/bam/api/SamOrder.scala

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/scala/com/fulcrumgenomics/bam/api/SamOrder.scala#L191 

Added line #L191 was not covered by tests
View more details on Codecov