Merge pull request #17 from g-rppl/dev

version 3.2

.Rbuildignore

@@ -9,3 +9,4 @@
 ^TODO\.md$
 ^doc$
 ^Meta$
+^LICENSE\.md$

.github/workflows/R-CMD-check.yml

@@ -1,60 +1,60 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-name: R-CMD-check
-
-jobs:
-  R-CMD-check:
-    runs-on: ${{ matrix.config.os }}
-
-    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
-
-    strategy:
-      fail-fast: false
-      matrix:
-        config:
-          - { os: macOS-latest, r: "release", rtools: "" }
-          - { os: windows-latest, r: "release", rtools: "43" }
-          - {
-              os: ubuntu-latest,
-              r: "devel",
-              http-user-agent: "release",
-              rtools: "",
-            }
-          - { os: ubuntu-latest, r: "release", rtools: "" }
-          - { os: ubuntu-latest, r: "oldrel-1", rtools: "" }
-
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      R_KEEP_PKG_SOURCE: yes
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          r-version: ${{ matrix.config.r }}
-          extra-repositories: 'https://mc-stan.org/r-packages/'
-          rtools-version: ${{ matrix.config.rtools }}
-          http-user-agent: ${{ matrix.config.http-user-agent }}
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::rcmdcheck
-          needs: check
-
-      - name: Build Cmdstan
-        shell: Rscript {0}
-        run: |
-          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
-          cmdstanr::install_cmdstan(cores = parallel::detectCores())
-
-      - uses: r-lib/actions/check-r-package@v2
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - { os: macOS-latest, r: "release", rtools: "" }
+          - { os: windows-latest, r: "release", rtools: "43" }
+          - {
+              os: ubuntu-latest,
+              r: "devel",
+              http-user-agent: "release",
+              rtools: "",
+            }
+          - { os: ubuntu-latest, r: "release", rtools: "" }
+          - { os: ubuntu-latest, r: "oldrel-1", rtools: "" }
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          extra-repositories: "https://stan-dev.r-universe.dev"
+          rtools-version: ${{ matrix.config.rtools }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - name: Build Cmdstan
+        shell: Rscript {0}
+        run: |
+          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
+          cmdstanr::install_cmdstan(cores = parallel::detectCores())
+
+      - uses: r-lib/actions/check-r-package@v2

.github/workflows/pkgdown.yml

@@ -27,7 +27,7 @@ jobs:
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
-          extra-repositories: "https://mc-stan.org/r-packages/"
+          extra-repositories: "https://stan-dev.r-universe.dev"
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:

.github/workflows/test-coverage.yml

@@ -1,38 +1,38 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-name: test-coverage
-
-jobs:
-  test-coverage:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          extra-repositories: "https://mc-stan.org/r-packages/"
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr
-          needs: coverage
-
-      - name: Build Cmdstan
-        shell: Rscript {0}
-        run: |
-          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
-          cmdstanr::install_cmdstan(cores = parallel::detectCores())
-
-      - name: Test coverage
-        run: covr::codecov(quiet = FALSE)
-        shell: Rscript {0}
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          extra-repositories: "https://stan-dev.r-universe.dev"
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Build Cmdstan
+        shell: Rscript {0}
+        run: |
+          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
+          cmdstanr::install_cmdstan(cores = parallel::detectCores())
+
+      - name: Test coverage
+        run: covr::codecov(quiet = FALSE)
+        shell: Rscript {0}

DESCRIPTION

@@ -3,7 +3,7 @@ Title: Estimate flight tracks from telemetry data
 Description: `movetrack` is a `R` package that provides simple functionality
   to estimate flight tracks from telemetry data using random walk models written
   in Stan.
-Version: 0.3.1
+Version: 0.3.2
 License: MIT + file LICENSE
 Authors@R: 
   person("Georg", "Rüppel", , "[email protected]", role = c("aut", "cre"),
@@ -19,7 +19,7 @@ Imports:
   lubridate,
   ggplot2
 Additional_repositories:
-  https://mc-stan.org/r-packages/
+  https://stan-dev.r-universe.dev
 SystemRequirements: CmdStan (https://mc-stan.org/users/interfaces/cmdstan)
 Encoding: UTF-8
 VignetteBuilder:
@@ -35,3 +35,4 @@ Suggests:
   DiagrammeR,
   testthat (>= 3.0.0)
 Config/testthat/edition: 3
+LazyData: true

LICENSE

@@ -1,21 +1,2 @@
-MIT License
-
-Copyright (c) 2023 Georg Rüppel <[email protected]>
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
+YEAR: 2024
+COPYRIGHT HOLDER: Georg Rüppel

LICENSE.md

@@ -0,0 +1,21 @@
+# MIT License
+
+Copyright (c) 2024 movetrack authors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

NAMESPACE

@@ -10,6 +10,7 @@ export(mapTrack)
 export(track)
 importFrom(HDInterval,hdi)
 importFrom(cmdstanr,cmdstan_model)
+importFrom(dplyr,any_of)
 importFrom(dplyr,arrange)
 importFrom(dplyr,bind_cols)
 importFrom(dplyr,distinct)

NEWS.md

@@ -1,3 +1,7 @@
+# movetrack 0.3.2
+
+- `aType` in `locate()` now optional.
+
 # movetrack 0.3.1
 
 ### Bug fixes
@@ -40,6 +44,6 @@
 
 ### New features
 
-- Support antenna-specific `det_range`
+- Support antenna-specific `aRange`
 - Utilisation of Stan's optimisation algorithms
 - Support multiple-variable summaries