docs: TRI-27 as Trinity Core Kernel#437

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docs(research): Add Data Pipeline Optimization Analysis + index v6.4 (#415)
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docs(research): v6.5 — VSA Memory Layout Optimization (#415)
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docs(research): v6.6 — Scientific Publication Patterns Zenodo (#415)
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docs(research): v6.7 — Sacred Attention Consciousness Analysis (#415)
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docs(research): v6.8 — Session 4 Autonomous Cycle Report (#415)
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feat(sacred): Enable formula_engine imports in math.zig v1.2 (#415)
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docs(research): v6.9 — TRI-27 ISA Sacred Mathematics Analysis (#415)
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docs(research): v7.0 — Queen Self-Learning Policy Analysis (#415)
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docs(research): v7.1 — Session 5 Autonomous Cycle Report FINAL (#415)
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docs(research): v7.2 — FPGA VIBEE Comprehensive Analysis (#415)
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docs(research): v7.3 — Session 6 Autonomous Cycle Report (#415)
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feat(sacred): Add formula_engine.zig — evidence classification and validation (#415)
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docs(discovery): resolve TODOs in p7, p19, p36 (#415)
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docs(research): v7.4 — Sacred Training Dynamics φ Optimization (#415)
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docs(research): v7.5 — Session 7 Autonomous Cycle Report (#415)
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feat(sacred,tri-lang): implement TODOs - expression counting, guard optimization, memory allocation (#415)
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docs(research): Ternary Neural Network comprehensive analysis (#415)

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docs(research): Session 4 Autonomous Cycle Report (#415)
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docs(research): Update RESEARCH_INDEX to v7.6 with TNN Comprehensive Analysis (#415)
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docs(zenodo): v5.1 enhancements — code examples, build instructions, hardware specs (#415)
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docs(research): Session 5 Autonomous Cycle Report (#415)
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docs(zenodo): B003 v5.1 — TRI-27 ISA code examples and build instructions (#415)
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docs(research): Add Consciousness Dual System Comprehensive Analysis (#415)
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docs(zenodo): B004 v5.1 — Queen Lotus Cycle code examples and build instructions (#415)
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docs(research): Update RESEARCH_INDEX to v7.7 with Consciousness Dual System (#415)
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docs(research): Session 9 Autonomous Cycle Report (#415)

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docs(zenodo): B005 v5.1 — Tri Language code examples and build instructions (#415)
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docs(zenodo): B006 v5.1 & B007 v5.1 — code examples and build instructions (#415)
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docs(research): Zenodo v5.1 enhancements complete summary (#415)
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docs(research): HSLM Neuroanatomical Architecture Comprehensive Analysis (#415)

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fix(tri_string): Correct moduli variable reference (#415)

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feat(tri_asm): Implement .tbin bytecode format emission (#415)

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docs(research): Update RESEARCH_INDEX to v7.9 (#415)

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docs(research): Zenodo FAIR 2025 Comprehensive Scientific Publication Guide (#415)

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docs(zenodo): v5.2 enhancements with algorithm boxes, diagrams, statistical analysis (#415)

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docs(zenodo): v5.2 enhancements for B003 (TRI-27 ISA) and B004 (Queen Lotus Cycle) (#415)

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docs(zenodo): v5.2 enhancements for B005, B006, B007 (#415)

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docs(research): T-JEPA Comprehensive Analysis V2 (#415)

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docs(zenodo): v5.2 completion summary — all 7 bundles enhanced (#415)

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docs(zenodo): parent collection v5.2 with complete framework architecture (#415)

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docs(citation): update to v5.2.0 with algorithm boxes and diagrams (#415)

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docs(research): Sacred Attention Comprehensive Analysis V2 — Session 13 (#415)

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docs(research): Update RESEARCH_INDEX to v8.2 (#415)

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docs(research): Ternary Activations & STE Comprehensive Analysis — Session 14 (#415)

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feat(zenodo): add v5.2 publishing support with algorithm boxes, diagrams, statistical analysis (#415)
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docs(zenodo): add comprehensive v5.2 upload guide with metadata and compliance (#415)
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docs(research): add Sacred Arithmetic Framework with phi-optimal formats (#415)
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docs(zenodo): add autonomous cycle summary for v5.2 enhancements (#415)
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docs(readme): add v5.2 bundles section with algorithm boxes and diagrams (#415)
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docs(research): Trinity Block Dual-System Comprehensive Analysis — Session 15 (#415)

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docs(research): add comprehensive scientific references bibliography v5.2 (#415)
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docs(zenodo): add comprehensive references sections to all v5.2 bundles (#415)
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docs(research): Session 16 — Sacred Mathematical Foundations Comprehensive Analysis (#415)

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docs(research): add second autonomous cycle report with references summary (#415)
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docs(research): add Trinity Scientific Manifesto with complete innovation catalog (#415)
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docs(research): Session 17 — HSLM Complete Architecture Synthesis (#415)

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docs(research): add third autonomous cycle report + README manifesto link (#415)
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docs(research): add comprehensive figures and video guide for Zenodo bundles (#415)
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docs(research): enhance research CITATION.cff with v5.2 metadata (#415)
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docs(research): Session 18 — NeurIPS/ICLR Paper Template Complete (#415)

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docs(research): add Zenodo advanced patterns and 2026 papers (#415)

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docs(research): add individual CITATION.cff for all 7 bundles (B001-B007) (#415)
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docs(research): Session 19 — Experimental Methodology and Reproducibility Guide (#415)

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docs(research): add Zenodo bundles index and B001 README template (#415)
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docs(research): Sessions 13-19 Cumulative Summary — Publication Milestone (#415)

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docs(research): add autonomous cycle report 2026-03-26 (#415)

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docs(research): add statistical computing patterns 2026 (#415)

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docs(research): update RESEARCH_INDEX_V3 to v8.9 (#415)

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docs(research): Session 20 — VSA Operations Comprehensive Analysis (#415)

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docs(research): add reproducibility guide 2026 (#415)

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docs(research): add fourth autonomous cycle report (#415)
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docs(research): add scientific README templates for all 7 bundles (B001-B007) (#415)
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docs(research): add fifth autonomous cycle report - FINAL STATUS (#415)
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docs(research): add .zenodo.json metadata files for all bundles (#415)
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docs(research): add Zenodo metadata validator script (#415)
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docs(research): add sixth autonomous cycle report (#415)
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docs(research): update index with new scientific docs (#415)

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docs(research): Update RESEARCH_INDEX to v9.0 (#415)

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docs(research): add statistical quick reference card (#415)

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docs(research): Session 21 — Sacred Training Dynamics V2 Comprehensive Analysis (#415)

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docs(research): add Zenodo upload helper and checksums (#415)
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docs(research): add final Zenodo v5.2 report - COMPLETE (#415)
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docs(research): add complete Zenodo night report in Russian (#415)

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docs(research): add Russian scientific glossary 2026 (#415)

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docs(research): add BibTeX bibliography and Schema.org metadata (#415)
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docs(research): add Zenodo quick links table (#415)

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docs(research): Update RESEARCH_INDEX to v9.1 (#415)

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docs(research): Session 22 — FPGA Sacred Mathematics Implementation (#415)

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docs(research): add CrossRef XML for DOI registration (#415)
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docs(research): add eighth autonomous cycle report (#415)
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docs(research): add EndNote XML and CSL citation style (#415)
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docs(research): Update RESEARCH_INDEX to v9.2 (#415)

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docs(research): add MEGA REPORT - all 9 cycles complete (#415)
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docs(research): Session 23 — Code Improvement Proposals Comprehensive (#415)

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docs(research): add bundle completeness checker and sections template (#415)
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docs(research): Session 24 — Energy Efficiency Comprehensive Analysis (#415)

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docs(zenodo): add Broader Impact, Ethics, Data/Code Availability, Acknowledgments to all 7 bundles v5.2 (#415)
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docs(zenodo): Add Broader Impact sections to all v5.2 bundles (#415)

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fix(research): update bundle completeness checker to support numbered headings (#415)
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docs(zenodo): enhance parent collection v5.2 with Broader Impact, Ethics, Data/Code Availability, Acknowledgments (#415)
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docs(research): Session 25 — Scalability Comprehensive Analysis (#415)

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docs(research): update bundle improvement report (#415)

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docs(research): Session 26 — Zenodo Best Practices 2026 Comprehensive (#415)

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docs(research): remove Russian language documentation
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docs(research): add comprehensive scientific improvements analysis
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docs(research): cleanup Russian docs and update quick links (#415)

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docs(research): cleanup wave9 checkpoint files

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docs(research): add computational complexity table to B001 v5.2
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fix(website): Set base path to root for consistent deployment (#415)

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docs(zenodo): add conference submission checklist 2026 (#415)

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fix(website): remove duplicate function from cosmos.ts

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docs(research): Session 27 — Security & Robustness Comprehensive (#415)

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docs(research): add NeurIPS 2026 LaTeX paper template for B001 (#415)

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docs(readme): Clean up Zenodo section - keep only v5.2, update research index reference
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docs(research): add computational complexity tables to Zenodo bundles B002-B007 (#415)

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docs(research): add defensive publication guide + arXiv template + video script (#415)

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docs(research): Session 28 — SOTA Comparison Comprehensive (#415)

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docs(research): add effect size standardization framework (NeurIPS 2026) (#415)

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fix(vsa_core): switch to manual ops implementation (#415)

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docs(research): add MLSys 2026 artifact appendix (#415)

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fix(test): Remove timing checks from hard gate in e2e_test VERDICT (#415)

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docs(research): update research index v9.8 with new scientific docs (#415)

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docs(research): add bias assessment framework (ICLR 2027 compliance) (#415)

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docs(research): update research index v9.9 with bias assessment framework (#415)

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docs(research): add autonomous cycle report — scientific enhancements (#415)

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docs(research): add multiple testing correction framework (#415)

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docs(research): add failure mode taxonomy (NeurIPS 2026) (#415)

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docs(research): update research index v10.0 with multiple testing + failure modes (#415)

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fix(codegen): Use ArrayListUnmanaged in tri_to_zig for explicit memory control (#415)

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docs(research): autonomous cycle final report — all P0-critical complete (#415)

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refactor(codegen): Complete ArrayListUnmanaged migration in tri_to_zig (#415)

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docs(research): add preregistration protocol (AsPredicted) (#415)

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docs(research): Session 29-30 — Publication Pipeline + Effect Sizes/MLSys (#415)

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docs(research): add comprehensive publication roadmap 2026 (#415)

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feat(codegen): Add simplified tri_to_zig codegen (#415)

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docs(research): add Zenodo figure generation script (#415)

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fix(docs): correct training hardware info — Apple M1 Max, not H100 GPUs (#415)

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feat(codegen): Add POC .tri→Zig codegen (#415)

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fix(docs): Clarify API status and version numbering (#415)

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docs(research): add Bayesian metrics + enhanced citation network (#415)
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docs(research): add session final report (#415)
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docs(research): Session 31 — Neuro-φ Coupling + Sacred Mathematics Biology Validation (#415)

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feat(testing): Add unified test report formatter (#415)

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docs(research): add experimental protocol + supplementary materials templates (#415)
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docs(research): Session 31 Report — Neuro-φ Coupling Complete (#415)

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docs(research): add statistical analysis checklist (#415)
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docs(research): add scientific figures guide (#415)
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docs(research): Session 32 — φ-Optimized Training + Zenodo Best Practices (#415)

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docs(research): add peer review response template (#415)
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docs(research): add session 31 final report (#415)
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docs(research): add FAIR data principles compliance guide (#415)
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docs(research): add paper submission readiness checklist (#415)
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docs(research): add scientific abstract + related work templates (#415)

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docs(research): Session 33 — Ternary Info Theory + Consciousness Backprop (ISSUE-415)

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docs(research): Session 33 extended — Sacred Proofs + Zenodo Patterns (ISSUE-415)

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docs(research): add comprehensive Methods section template (#415)

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docs(research): Session 33 Progress Report — Complete Summary (ISSUE-415)

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docs(research): add comprehensive Experimental Results template (#415)

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docs(research): add Data Management + Code Availability templates (#415)

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docs(research): add code improvement reprioritization plan (#415)

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docs(research): Session 33 extended — T-JEPA + VSA Unified Analysis (ISSUE-415)

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fix(docs): API documentation clarification + test reporting infrastructure (#415)

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fix(build): Disable test_report_step for Zig 0.15 compatibility (#415)

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docs(research): translate Queen Lotus experiments to English (#415)

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docs(research): add Open Science Policy template (#415)

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docs(research): add Scientific Paper Structure template (#415)

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docs(research): add Grant Proposal template (#415)

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refactor(codegen): Add getTemplate function for file-based templates (#415)

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docs(research): Session 34 final report (#415)

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docs(research): add Model Card + Dataset Card templates (#415)

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docs(research): Session 35 final report (#415)

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docs(i18n): translate Russian documentation to English (#415)

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docs(research): add Scientific README template (#415)

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docs(research): Sessions 34-35 comprehensive report (#415)

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docs(research): Session 33 retrospective (ISSUE-415)
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fix(i18n): translate Russian comments to English (#415)

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docs(research): add Scientific Poster template (#415)

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docs(research): Update RESEARCH_INDEX to v11.6 (#415)

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docs(research): add Conference Slide Deck + Poster templates (#415)
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docs(research): update research index to v12.7 (#415)
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docs(research): Session 36 final report (#415)
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docs(research): comprehensive Sessions 34-36 report (#415)
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fix(test): add missing config params to restarted providers (#415)

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docs(research): add Peer Review Response template (#415)
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docs(research): update research index to v12.8 (#415)
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docs(research): add Submission Cover Letter template (#415)
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docs(research): update research index to v12.9 (#415)
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feat(hslm): Add trit-wise attention weights (#415)
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docs(research): add Press Release template (#415)
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docs(research): update research index to v13.0 (#415)
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docs(research): Extended Session final comprehensive report (#415)
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docs(research): update research index to v13.1 (#415)
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feat(hslm): trit-wise attention weights (ISSUE-415)

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docs(research): add Video Presentation Script template (#415)
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docs(research): final research index update to v13.2 (#415)
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feat(contracts): Foundry tests v3.1 for TrinityVault (ISSUE-415)

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fix(test): add untracked test files to commit (#415)

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docs(research): add Zenodo Bundle Enhanced Format Guide (#415)
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docs(research): add Scientific Abstract Writing Template (#415)
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refactor(storm): wave_executor system fixes (#415)

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docs(research): add Zenodo v5.2 improvement analysis (#415)
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fix(queen): Zig 0.15 atomicFile API compatibility (#415)
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fix(queen/queen): Zig 0.15 compatibility (ISSUE-415)

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feat(queen): add infinite daemon loop with 60s heartbeat (#415)

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feat(hslm): Consciousness-Aware LR extension (ISSUE-415)

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fix(build): use inline module for staking tests (#415)
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fix(doctor): add Queen liveness validation (#415)

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fix(shard): disk persistence test after compression (#433)

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fix(queen): Zig 0.15 getpid() API change (#433)

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feat(vsa): Stage 1.0 full template codegen (#433)

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fix(vibeec): update tri_to_zig codegen to Stage 1.0
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feat(vsa): TTT Dogfood Stage 1.0 — switch to generated implementations
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docs(integration): add TRI-27 + Queen + FPGA integration examples (#433)

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docs(tri27): add user guide with assembly tutorial (#433)

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docs(brain): add Queen PFC architecture documentation #433

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feat(kaggle): add DeepMind AGI hackathon submission notebook #433

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merge: feat/issue-411-linear-types-ownership to main
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docs(research): add Paper 001 - Ternary Neural Networks with φ-optimization #433

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docs(research): add statistical validation framework 2026 (#433)

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docs(research): add Paper 002 - TRI-27 FPGA Architecture (#433)

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docs(research): add Paper 003 - VSA with Ternary Hyperdimensional Computing (#433)

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docs(zenodo): v6.1 Phase 4: mathematical foundations (#433)

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docs(submissions): add DARPA CLARA technical narrative (#433)

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docs(zenodo): v6.1 Phase 4 extended: full mathematical derivations (#415)

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docs(research): add Autonomous Cycle Implementation Guide (#433)

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docs(zenodo): v6.1 checklist for NeurIPS 2026 (#433)

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docs(submissions): NeurIPS 2026 paper draft + statistical validation framework
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fix(vsa): revert usingnamespace to explicit exports (#433)
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docs(zenodo): v6.1 Jupyter notebooks and upload summary (#433)

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docs(zenodo): v6.1 completion report with inventory (#433)

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docs(zenodo): v6.1 figure generation guide without Python (#433)

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docs(zenodo): v6.1 step-by-step upload guide (#433)

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docs(research): v6.1 comprehensive science index (#433)

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docs(zenodo): v6.1 LaTeX algorithm boxes for papers (#433)

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docs(zenodo): v6.1 comprehensive release notes (#433)

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docs(zenodo): v6.1 comprehensive README for Zenodo collection (#433)

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docs(zenodo): v6.1 master summary - complete documentation inventory (#433)

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docs(zenodo): v6.1 technical deep-dive - consciousness gate + VSA attention (#433)

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fix(figures): Zenodo figure generation fixes - Fixed FancyBboxPatch API usage, generated all 22 figures (11 PNG + 11 SVG) - Related: #433

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docs(zenodo): v6.1 final complete checklist - ready for upload (#433)

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docs(research): Zenodo scientific patterns comprehensive guide v1.0 - Complete patterns for 5-sentence abstract, statistical validation, FAIR principles, metadata, algorithm boxes, figures, quality…

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docs(research): Zenodo v6.1 upload automation guide - Complete workflow with pre-upload validation, manual steps, API template, QA checklist, troubleshooting - Related: #433

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docs(research): HSLM improvement proposals v1.0 - 8 evidence-based improvements: adaptive sacred scaling, learned ternary threshold, per-channel alpha, adaptive consciousness, bootstrap CI, FPGA ba…

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docs(zenodo): v6.1 VSA architecture documentation for B007 (#433)

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fix(hslm): sacred attention adaptive scale compilation errors (#433)

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docs(research): theoretical framework v6.0 - category theory and VSA (#433)

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docs(research): experimental results v1 - comparative analysis (#433)

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docs(research): comprehensive bibliography v2.0 (#433)

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docs(research): Zenodo publication best practices v3.0 (#433)

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docs(research): HSLM adaptive sacred scaling implementation - Added adaptive_scaling.zig module with dynamic scaling based on training progress (SACRED_ATTN_SCALE_BASE=0.354), layer-wise scaling (d…

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