docs: improve documentation UX and best practices#455

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Commits on Mar 24, 2026

feat(uart): v3.81 - Extended Percentile Bands (#403)

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fix(tri27): encoder/decoder bit position alignment (#403)

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fix(tri27): encoder/decoder bit position alignment (#403)

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feat(uart): v3.82 - Spectral Periodicity Detection (#403)

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feat(uart): v3.82 - Spectral Periodicity Detection (#403)

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feat(uart): v3.83 - Multi-modal Distribution Detection (#403)

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feat(uart): v3.83 - Multi-modal Distribution Detection (#403)

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feat(uart): v3.84 - Auto-tuning Recommendations (#403)

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feat(uart): v3.84 - Auto-tuning Recommendations (#403)

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fix(tri27): encoder @bitCast size mismatch fix (#403)

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fix(tri27): encoder @bitCast size mismatch fix (#403)

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fix(tri27): encoder i16 bitwise ops fix (#403)

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fix(tri27): encoder i16 bitwise ops fix (#403)

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feat(uart): v3.85 - Quick Health Check (#403)

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feat(uart): v3.85 - Quick Health Check (#403)

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fix(tri27): encoder fix and update (#403)

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fix(tri27): encoder fix and update (#403)

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feat(uart): v3.86 - Performance Profile Classification (#403)

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feat(uart): v3.86 - Performance Profile Classification (#403)

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feat(uart): v3.87 - Version banner updates (#403)

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feat(uart): v3.87 - Version banner updates (#403)

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feat(uart): v3.88 - Burst Analysis (#403)

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feat(uart): v3.88 - Burst Analysis (#403)

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feat(uart): v3.89 - Connection Stability Score (#403)

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feat(uart): v3.89 - Connection Stability Score (#403)

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feat(uart): v3.90 - Adaptive Configuration Generator (#403)

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feat(uart): v3.90 - Adaptive Configuration Generator (#403)

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feat(uart): v3.91 - Packet Loss Pattern Detection (#403)

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feat(uart): v3.91 - Packet Loss Pattern Detection (#403)

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feat(uart): v3.92 - Session Summary (#403)

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feat(uart): v3.92 - Session Summary (#403)

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feat(uart): v3.93 - Statistical Significance Tests (#403)

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feat(uart): v3.93 - Statistical Significance Tests (#403)

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feat(uart): v3.95 - Outlier Summary (#403)

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feat(uart): v3.95 - Outlier Summary (#403)

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feat(uart): v3.96 - Time Series Decomposition (#403)

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feat(uart): v3.96 - Time Series Decomposition (#403)

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feat(uart): v3.97 - Rate Limiting Detection (#403)

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feat(uart): v3.97 - Rate Limiting Detection (#403)

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feat(uart): v3.98 - Latency Distribution Fitting (#403)

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feat(uart): v3.98 - Latency Distribution Fitting (#403)

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feat(uart): v3.99 - Packet Drift Detection (#403)

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feat(uart): v3.99 - Packet Drift Detection (#403)

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feat(uart): v4.00 - Anomaly Prediction System (#403) [MILESTONE]

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feat(uart): v4.00 - Anomaly Prediction System (#403) [MILESTONE]

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feat(uart): v4.01 - Quick Diagnostics (#403)

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feat(uart): v4.01 - Quick Diagnostics (#403)

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feat(uart): v4.02 - Connection Quality Timeline (#403)

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feat(uart): v4.02 - Connection Quality Timeline (#403)

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feat(uart): v4.03 - Signal Quality Index (#403)

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feat(uart): v4.03 - Signal Quality Index (#403)

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feat(uart): v4.04 - Adaptive Sampling Recommendations (#403)

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feat(uart): v4.04 - Adaptive Sampling Recommendations (#403)

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feat(uart): v4.05 - Historical Session Comparison (#403)

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feat(uart): v4.05 - Historical Session Comparison (#403)

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feat(uart): v4.06 — Connection Fingerprinting (#403)

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feat(uart): v4.06 — Connection Fingerprinting (#403)

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feat(uart): v4.07 — Predictive Health Score (#403)

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feat(uart): v4.07 — Predictive Health Score (#403)

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feat(uart): v4.08 — Real-time Alert System (#403)

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feat(uart): v4.08 — Real-time Alert System (#403)

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feat(uart): v4.09 — Session Comparison Dashboard (#403)

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feat(uart): v4.09 — Session Comparison Dashboard (#403)

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feat(uart): v4.10 — Version banner updates (#403)

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feat(uart): v4.10 — Version banner updates (#403)

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feat(uart): v4.11 — Advanced Pattern Recognition (#403)

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feat(uart): v4.11 — Advanced Pattern Recognition (#403)

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feat(uart): v4.12 — Adaptive Threshold Auto-tuning (#403)

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feat(uart): v4.12 — Adaptive Threshold Auto-tuning (#403)

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feat(uart): v4.13 — Connection Benchmarking (#403)

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feat(uart): v4.13 — Connection Benchmarking (#403)

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feat(uart): v4.14 — Smart Recommendations (#403)

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feat(uart): v4.14 — Smart Recommendations (#403)

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feat(queen): add Tri27Event and recordTri27Episode function (#403)

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feat(queen): add Tri27Event and recordTri27Episode function (#403)

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feat(uart): v4.15 — Traffic Flow Analysis (#403)

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feat(uart): v4.15 — Traffic Flow Analysis (#403)

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feat(uart): v4.15 — Traffic Flow Analysis (#403)

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feat(uart): v4.15 — Traffic Flow Analysis (#403)

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test(queen): add recordTri27Episode mapping tests (#403)

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test(queen): add recordTri27Episode mapping tests (#403)

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chore(build): disable tri27-cli from default build (#403)
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chore(build): disable tri27-cli from default build (#403)
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feat(uart): v4.16 — Network Health Index (#403)

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feat(uart): v4.16 — Network Health Index (#403)

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feat(uart): v4.17 — Latency Prediction Engine (#403)

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feat(uart): v4.17 — Latency Prediction Engine (#403)

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chore: formatting fixes for tri27_experience.zig (#403)

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chore: formatting fixes for tri27_experience.zig (#403)

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chore: formatting and build verification (#403)

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chore: formatting and build verification (#403)

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feat(queen): recordTri27Episode + JSONL serialization test (#403)
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feat(queen): recordTri27Episode + JSONL serialization test (#403)
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feat(queen): complete TRI-27 → Episode integration (#403)

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feat(queen): complete TRI-27 → Episode integration (#403)

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fix(queen): evaluate.zig tests fixed for Zig 0.15 (#403)

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fix(queen): evaluate.zig tests fixed for Zig 0.15 (#403)

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feat(queen): Phase 3 - Episode Window Evaluation & Policy Generation (#403)

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feat(queen): Phase 3 - Episode Window Evaluation & Policy Generation (#403)

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feat(tri27): emit_zig.zig Phase 3 - full TRI-27 VM implementation in Zig (4600+ lines, needs zig fmt) (#403)
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feat(tri27): emit_zig.zig Phase 3 - full TRI-27 VM implementation in Zig (4600+ lines, needs zig fmt) (#403)
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feat(wave9): Local Docker infrastructure with ARM64 training (#357)
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feat(wave9): Local Docker infrastructure with ARM64 training (#357)
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fix(fpga): uart-echo-test build fix + hardware debug results (#403)

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fix(fpga): uart-echo-test build fix + hardware debug results (#403)

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fix(queen): evaluate.zig Zig 0.15 compatibility fixes (#403)

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fix(queen): evaluate.zig Zig 0.15 compatibility fixes (#403)

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feat(queen): Phase 4 - Episode-Aware Lotus Cycle (#403)

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feat(queen): Phase 4 - Episode-Aware Lotus Cycle (#403)

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feat(tri27): complete Zig and Verilog backends (#403)

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feat(tri27): complete Zig and Verilog backends (#403)

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feat(tri): integrate TRI-27 CLI into main tri binary (#403)

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feat(tri): integrate TRI-27 CLI into main tri binary (#403)

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feat(queen): Phase 5 - Self-Learning for TRI-27 (#403)

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feat(queen): Phase 5 - Self-Learning for TRI-27 (#403)

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docs(tri27): fix CLI documentation discrepancies (#403)

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docs(tri27): fix CLI documentation discrepancies (#403)

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fix(cli27): 5 mechanical Zig 0.15 fixes (#403)
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fix(cli27): 5 mechanical Zig 0.15 fixes (#403)
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docs(tri27): Phase 6 - Complete README.md (#401)
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docs(tri27): Phase 6 - Complete README.md (#401)
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style: tri_asm.zig formatting (#403)

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style: tri_asm.zig formatting (#403)

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docs: Issue #405 - Documentation audit improvements

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docs: Issue #405 - Documentation audit improvements

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docs: Issue #405 - Add CONTRIBUTING, CODE_OF_CONDUCT, troubleshooting

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docs: Issue #405 - Add CONTRIBUTING, CODE_OF_CONDUCT, troubleshooting

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feat(cloud): add generate-domain command (#403)

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feat(cloud): add generate-domain command (#403)

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fix(zig-hslm): Zig 0.15 compatibility fixes (#403)

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fix(zig-hslm): Zig 0.15 compatibility fixes (#403)

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feat(evolution): add multi-objective fitness to evolve status leaderboard

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feat(evolution): add multi-objective fitness to evolve status leaderboard

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cleanup(tri27): remove unused backup CLI files

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cleanup(tri27): remove unused backup CLI files

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fix(tri27): add t-register support to lexer (#403)
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fix(tri27): add t-register support to lexer (#403)
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chore: ignore runtime data files (#403)

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chore: ignore runtime data files (#403)

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chore: documentation consistency fixes (#403)

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chore: documentation consistency fixes (#403)

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fix(tri27): correct encoder format bit shifts (#403)

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fix(tri27): correct encoder format bit shifts (#403)

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fix(tri27): update asm_parser tests for correct encoder format (#403)

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fix(tri27): update asm_parser tests for correct encoder format (#403)

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fix(tri): add stub functions for neuro audit/map/validate/flow commands (#403)

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fix(tri): add stub functions for neuro audit/map/validate/flow commands (#403)

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feat(neuro): add neuroanatomical architecture commands (#403)

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feat(neuro): add neuroanatomical architecture commands (#403)

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docs(tri27): add .t27 format spec + Raphe reference impl (#403)

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docs(tri27): add .t27 format spec + Raphe reference impl (#403)

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docs(queen): translate lotus experiments to English (#403)

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docs(queen): translate lotus experiments to English (#403)

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chore(tri): ignore runtime data files in git status (#403)
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chore(tri): ignore runtime data files in git status (#403)
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feat(docs): add TRI_AUTOCODE_SPEC master specification (#406)

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feat(docs): add TRI_AUTOCODE_SPEC master specification (#406)

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docs(research): update TRI_AUTOCODE_SPEC v1.1 with .tri annotations (#406)

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docs(research): update TRI_AUTOCODE_SPEC v1.1 with .tri annotations (#406)

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feat(tri): add canon_map.json for NA-R11 tracking (#403)

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feat(tri): add canon_map.json for NA-R11 tracking (#403)

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feat(tri27): add CopticReg enum with 27 glyphs + 3-bank (#407)

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feat(tri27): add CopticReg enum with 27 glyphs + 3-bank (#407)

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feat(tri27): add Coptic glyph parsing in asm_parser (#407)

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feat(tri27): add Coptic glyph parsing in asm_parser (#407)

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feat(tri): add cell.zig signature generation for NA-R11 (#407)

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feat(tri): add cell.zig signature generation for NA-R11 (#407)

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feat(tri): add t27_cli.zig for 'tri t27 verify' command (#407)

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feat(tri): add t27_cli.zig for 'tri t27 verify' command (#407)

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feat(tri): add runtime data files to gitignore (#407)

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feat(tri): add runtime data files to gitignore (#407)

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docs: Issue #405 - Complete documentation audit - All phases

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docs: Issue #405 - Complete documentation audit - All phases

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feat(tri): add canonical UART bridge flow commands (#403)
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feat(tri): add canonical UART bridge flow commands (#403)
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Commits on Mar 27, 2026

docs(readme): TRI-27 as Trinity Core Kernel (#411)
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feat(tri): Zenodo V16 Core Framework - Statistical Rigor + Model Card + Dataset Card (#407)

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feat(tri): Add v8.0 bundle publish command (ISSUE-435)

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feat(tri): Zenodo V16 Extensions - LaTeX Tables + DOI Manager + Extensions (#435)

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docs(readme): TRI-27 as Trinity Core Kernel (#411) (#438)
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docs(research): Enhance v8.0 Zenodo descriptions with scientific rigor (ISSUE-435)

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fix(tri27): Zig 0.15 compatibility + V16 summary (#435)

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docs(research): V17 Gap Analysis - Scientific Best Practices 2025 (#435)

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tools(research): Add Zenodo v8.0 upload Python script (ISSUE-435)

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feat(tri): Zenodo V16 CLI integration + build fixes (#435)
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feat(tri): Terminal colors + ELO arena + Zenodo hub (#435)

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docs(zenodo): consolidate all info into ZENODO_HUB.md (#435)

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feat(tri): add package command for friend bundle

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docs(tri): Zenodo V16 CLI integration — Added V16 command stubs, documented complete framework (#435)
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feat(zenodo): v9.0 scientific enhancement for all 8 bundles (#435)

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fix(zenodo): add v9.0 bundle config to upload script (#435)

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fix(tri27): rlpEncode allocator parameter error (#435)

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feat(tri27): Token FFI for TRI-27 - Issue #435
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Merge feat/docs-tri27-clean into main
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fix(build): Resolve V16 build errors (#435)
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fix(build): V16 build errors and improvements (#435)
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fix(build): Resolve V16 build errors and improvements (#435)
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fix(vm): implement Sacred opcodes v7.0, fix build errors (#435)

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fix(zenodo): Zig 0.15 ArrayList API migration (#435)

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docs(citation): Add v3.0.0 CITATION.cff with 2025 conference standards (#435)

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docs(zenodo): Update bundle docs to v9.0 (#435)

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docs(zenodo): Add research summary and v9.0 improvements proposal (#435)

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docs(zenodo): Add cross-bundle references and HDC research (#435)

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docs(zenodo): Add complete v9.0 implementation summary (#435)

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feat(dev-loop): full 10-step autonomous cycle with experience/ source of truth (#439)

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feat(clara): Add CLARA integration tests and CLI commands (#435)

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feat(tri27): TRI-27 Staking Module — reuses Trinity DePIN patterns (#435)

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chore: Merge remote changes (#435)
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docs: improve documentation UX and best practices
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feat(website): Move TechTree to /tree, add Publications, fix docs link (#435)
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fix(ci): deploy-docs.yml - fix paths (website -> apps/website) (#435)
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docs(readme): Update multilingual list (#435)
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fix(ci): Add build:ci script to skip typecheck in CI (#435)
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fix: restore gen_*.zig files and minor updates (#435)

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fix(ci): Use explicit cd instead of working-directory for npm (#435)
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feat(tri): Add tree data structure modules (B+, Fibonacci, radix, red-black, suffix, VEB) (#435)
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fix(website): Add index.html to git (was ignored by root .gitignore) (#435)
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fix(tri): Zig 0.15 compatibility fixes for gen modules (#435)
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fix(docs): Escape < in MDX to avoid JSX parsing error (#435)
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fix(tri): final generator updates (#435)

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fix(tri): Zig 0.15 compatibility and formatting improvements (#435)
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fix(website): Change base from /trinity/ to / for t27.ai custom domain (#435)
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fix(tri): zenodo significance fix and generators (#435)

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fix(ci): Add fetch-depth: 0 to checkout for gh-pages action (#435)
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feat(tri): add new generator templates (#435)

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fix(tri): Fix format specifier for interpretation field
Antigravity Agent
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fix(ci): Use direct git push instead of peaceiris action for gh-pages (#435)
Antigravity Agent
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fix (#458)
gHashTag
authored
feat(tri): Add crypto modules (AES, Caesar, SHA256, PBKDF2, RSA, Vigenère, XOR cipher, UUID generator) (#435)
Antigravity Agent
committed
fix(ci): Copy CNAME from public to combined dir (#435)
Antigravity Agent
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feat(website): Add CNAME for t27.ai (#435)
Antigravity Agent
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fix(docs): TRI-27 Token CLI documentation + Zig 0.15 fixes (#435)

Antigravity Agent
and
claude
committed
fix(tri_cloud): Fix Zig 0.15 compatibility issues
Antigravity Agent
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fix(tri): Fix error handling in tri_cloud.zig and gen modules (#435)
Antigravity Agent
committed
fix(docs, build): Fix broken hyperlinks and Zig 0.15 compatibility (#435)

Antigravity Agent
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claude
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feat(tri): Add Zenodo V16-V20 scientific metadata modules (#435)

Antigravity Agent
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claude
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fix(tri): Comment out V21/V22 zenodo commands until modules implemented (#435)

Antigravity Agent
and
claude
committed
feat(tri): Add V21 broader impact and V22 reproducibility modules (#435)
Antigravity Agent
committed
fix(build): Zig 0.15 compatibility fixes (#435)

Antigravity Agent
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claude
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feat(tri): Add V20 integrated scientific publication system (#435)
Antigravity Agent
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fix(website): Update submodule for HashRouter SPA routing (#435)
Antigravity Agent
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feat(tri): Add V23 complete paper export system (#435)
Antigravity Agent
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Merge remote-tracking branch 'origin/main' into docs/improve-ux-and-best-practices
curtixemmielrhd
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fix(ci): fix docs-check CI failures
curtixemmielrhd
committed