Add error message to sysout for input validation

genepi · May 29, 2024 · 560fe94 · 560fe94
1 parent 72ce241
commit 560fe94
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Showing 3 changed files with 1 addition and 1 deletion.
diff --git a/files/mutserve.zip b/files/mutserve.zip
diff --git a/tests/data/bam/HG002.bam → tests/data/bam/no_rg/HG002.bam b/tests/data/bam/HG002.bam → tests/data/bam/no_rg/HG002.bam
diff --git a/tests/mitocalling.nf.test b/tests/mitocalling.nf.test
@@ -164,7 +164,7 @@ nextflow_pipeline {
         when {
             params {
                project = "test-job"
-               files = "$projectDir/tests/data/bam/HG002.bam"
+               files = "$projectDir/tests/data/bam/no_rg/HG002.bam"
                mode = "mutect2"
                output = "out"
                output_reports = "reports"