Replace manual assertions with snapshot

genepi · Dec 15, 2023 · b29eb84 · b29eb84
1 parent fcc40c6
commit b29eb84
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Showing 2 changed files with 30 additions and 16 deletions.
diff --git a/tests/modules/local/filter_results.nf.test b/tests/modules/local/filter_results.nf.test
@@ -19,22 +19,7 @@ nextflow_process {
 
         then {
             assert process.success
-
-            with(process.out) {
-                with(results_filtered){
-
-                assert (size() == 2)
-
-                // access second element of first tuple
-                def lines = path(get(0).get(1)).readLinesGzip()
-
-                //check if regenie header is as expected
-                assert lines.get(0).equals("CHROM\tGENPOS\tID\tALLELE0\tALLELE1\tA1FREQ\tINFO\tN\tTEST\tBETA\tSE\tCHISQ\tLOG10P\tEXTRA")
-
-                //check amount of lines
-                assert (lines.size() == 117)
-                }
-                }
+            assert snapshot(process.out).match()
             }
 
         }

diff --git a/tests/modules/local/filter_results.nf.test.snap b/tests/modules/local/filter_results.nf.test.snap
@@ -0,0 +1,29 @@
+{
+    "Should output only 117 filtered lines": {
+        "content": [
+            {
+                "0": [
+                    [
+                        "Y1",
+                        "Y1.regenie.filtered.gz:md5,973ef7138c333f4c2d2787fad6c83f50"
+                    ],
+                    [
+                        "Y2",
+                        "Y2.regenie.filtered.gz:md5,d471f295b41ae96c0b094faa464c549b"
+                    ]
+                ],
+                "results_filtered": [
+                    [
+                        "Y1",
+                        "Y1.regenie.filtered.gz:md5,973ef7138c333f4c2d2787fad6c83f50"
+                    ],
+                    [
+                        "Y2",
+                        "Y2.regenie.filtered.gz:md5,d471f295b41ae96c0b094faa464c549b"
+                    ]
+                ]
+            }
+        ],
+        "timestamp": "2023-12-15T10:16:52.606586"
+    }
+}