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Update regenie version to 3.4 #93

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merged 9 commits into from
Dec 15, 2023
Merged

Update regenie version to 3.4 #93

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12a6cbe
Merge pull request #1 from genepi/main
filosi Nov 2, 2022
aa7eb86
Merge branch 'genepi:main' into main
filosi Mar 1, 2023
fc09b44
Merge branch 'genepi:main' into main
filosi Jun 19, 2023
48fed75
Merge branch 'genepi:main' into main
filosi Jul 20, 2023
26ed467
Merge branch 'genepi:main' into main
filosi Aug 7, 2023
13a0df4
Merge branch 'genepi:main' into main
filosi Aug 28, 2023
c71136e
Merge branch 'genepi:main' into main
filosi Dec 14, 2023
44fc75f
Update docker with regenie v3.4
filosi Dec 15, 2023
77a1293
Update Ubuntu version to 22.04
filosi Dec 15, 2023
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12 changes: 6 additions & 6 deletions Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM ubuntu:18.04
FROM ubuntu:22.04
COPY environment.yml .

# Install miniconda
Expand Down Expand Up @@ -45,12 +45,12 @@ RUN jbang export portable -O=RegenieValidateInput.jar RegenieValidateInput.java

# Install regenie (not as conda package available)
WORKDIR "/opt"
ENV REGENIE_VERSION="v3.3"
ENV REGENIE_VERSION="v3.4"
RUN mkdir regenie && cd regenie && \
wget https://github.com/rgcgithub/regenie/releases/download/${REGENIE_VERSION}/regenie_${REGENIE_VERSION}.gz_x86_64_Linux.zip && \
unzip -q regenie_v3.*.gz_x86_64_Linux.zip && \
rm regenie_v3.*.gz_x86_64_Linux.zip && \
mv regenie_v3.*.gz_x86_64_Linux regenie && \
unzip -q regenie_${REGENIE_VERSION}.gz_x86_64_Linux.zip && \
rm regenie_${REGENIE_VERSION}.gz_x86_64_Linux.zip && \
mv regenie_${REGENIE_VERSION}.gz_x86_64_Linux regenie && \
chmod +x regenie

ENV PATH="/opt/regenie/:${PATH}"
ENV PATH="/opt/regenie/:${PATH}"
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