Merge pull request #6 from genome/vep_101.0_v1

Vep 101.0 v1
genome · Feb 3, 2021 · 8966101 · 8966101
2 parents 40ab68d + 1d4a5c1
commit 8966101
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diff --git a/Dockerfile b/Dockerfile
@@ -1,8 +1,6 @@
-FROM ensemblorg/ensembl-vep:release_95.3
-MAINTAINER John Garza <[email protected]>
-
-LABEL \
-    description="Vep helper image"
+FROM ensemblorg/ensembl-vep:release_101.0
+LABEL maintainer="John Garza <[email protected]>"
+LABEL description="Vep helper image"
 
 USER root
 
@@ -33,10 +31,6 @@ https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/95/SpliceRegion.pm
 https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/95/dbNSFP.pm \
 https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/95/dbNSFP_replacement_logic
 
-COPY add_annotations_to_table_helper.py /usr/bin/add_annotations_to_table_helper.py
-COPY docm_and_coding_indel_selection.pl /usr/bin/docm_and_coding_indel_selection.pl
 COPY vcf_check.pl /usr/bin/vcf_check.pl
-COPY intervals_to_bed.pl /usr/bin/intervals_to_bed.pl
-COPY single_sample_docm_filter.pl /usr/bin/single_sample_docm_filter.pl
 
 USER vep
diff --git a/README.md b/README.md
@@ -1 +1 @@
-This repo has moved to genome/docker-vep_helper-cwl
+VEP plus accessory script for empty VCF handling
diff --git a/add_annotations_to_table_helper.py b/add_annotations_to_table_helper.py
diff --git a/docm_and_coding_indel_selection.pl b/docm_and_coding_indel_selection.pl
diff --git a/intervals_to_bed.pl b/intervals_to_bed.pl
diff --git a/single_sample_docm_filter.pl b/single_sample_docm_filter.pl
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		This repo has moved to genome/docker-vep_helper-cwl
		VEP plus accessory script for empty VCF handling