Patch 1 #82
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Patch 1 #82
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Sometimes there would be empty values from previous steps of the NanoCLUST pipeline, however, this would result in the following error:
Command exit status:
1
Command output:
(empty)
Command error:
Traceback (most recent call last):
File ".command.sh", line 65, in <module>
get_abundance(names,paths, "G")
File ".command.sh", line 59, in get_abundance
df_final_grp = merge_abundance(dfs, tax_level)
File ".command.sh", line 49, in merge_abundance
df_final["taxid"] = [get_taxname(row["taxid"], tax_level) for index, row in df_final.iterrows()]
File ".command.sh", line 49, in <listcomp>
df_final["taxid"] = [get_taxname(row["taxid"], tax_level) for index, row in df_final.iterrows()]
File ".command.sh", line 28, in get_taxname
return json.loads(complete_tax)[0][tax_level_tag]
IndexError: list index out of range
So I changed the code (updated code on line 23 to 28), and this gave me no errors.
Sorry I forgot to move the "return name" line
HDBSCAN AND UMAP-LEARN update + addition of numba and llvmlite
Fixing of creating new matplotlib folders in your directory
Changed the Umap Set Size to 84000 in order to prevent error 137 (lack of computational power)
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