ggavelis / infer_splice_variants_from_Trinity Public

Notifications You must be signed in to change notification settings
Fork 0
Star 0

Did you know that Trinity predicts splice variants? (Chrysalis works even for de novo transcriptomes, and its input--though heuristic--is valuable). Likewise, TransDecoder can predict multiple ORFs per protein--potentially capturing alternative splicing. These predictions are usually lost once we rename our proteins to shorter seqids. This scrip…

0 stars 0 forks Branches Tags Activity

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
0_job_submitter.sh		0_job_submitter.sh
1_job_script.sh		1_job_script.sh
2_corescript_splice_variant_counter.py		2_corescript_splice_variant_counter.py
README.md		README.md

Repository files navigation

infer_splice_variants_from_Trinity

shell | slurm | python

About

Did you know that Trinity predicts splice variants? (Chrysalis works even for de novo transcriptomes, and its input--though heuristic--is valuable). Likewise, TransDecoder can predict multiple ORFs per protein--potentially capturing alternative splicing. These predictions are usually lost once we rename our proteins to shorter seqids. This scrip…

python shell slurm

Report repository

Releases

No releases published

Packages

No packages published

Languages