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updated cran release notes. ready for release
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| ## Test environments and R CMD check results | ||
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| I did update from knitr::knit to installing rmarkdown and using knitr::rmarkdown as per request of knitr. This has increased my vignette file sizes. | ||
| ## Comments | ||
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| I know my vignettes are getting larger. Any idea on how to reduce the pdf size, even though they are visualization vignettes? Otherwise, if it's not a big deal, I'll keep them as is. | ||
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| All three environments have the same NOTE on package size. Linux has a NOTE on mis-spelled words, it is a false positive. | ||
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| All downstream authors were not contacted as the update is minor. Only in contact with authors who requested minor update. | ||
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| Thank you for your time, | ||
| Barret | ||
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| * local OS X install (x86_64-apple-darwin13.4.0), R 3.2.3 | ||
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| ## Test environments and R CMD check results | ||
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| * local OS X install (x86_64-apple-darwin13.4.0), R 3.3.0 | ||
| * There were no ERRORs or WARNINGs. | ||
| * There is one NOTE. | ||
| * checking installed package size ... NOTE | ||
| installed size is 7.6Mb | ||
| installed size is 10.5Mb | ||
| sub-directories of 1Mb or more: | ||
| doc 6.8Mb | ||
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| * ubuntu 12.04 (on travis-ci, x86_64-pc-linux-gnu), R 3.2.3 | ||
| * There were no ERRORs, WARNINGs. | ||
| * There are two NOTEs. The libcurl NOTE is a false positive. | ||
| * checking CRAN incoming feasibility ... NOTE | ||
| Maintainer: ‘Barret Schloerke <[email protected]>’ | ||
| Checking URLs requires 'libcurl' support in the R build | ||
| doc 9.7Mb | ||
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| * ubuntu 12.04 (on travis-ci, x86_64-pc-linux-gnu), R 3.3.0 | ||
| * There were no ERRORs or WARNINGs. | ||
| * There is one NOTE | ||
| * checking installed package size ... NOTE | ||
| installed size is 7.5Mb | ||
| sub-directories of 1Mb or more: | ||
| doc 6.7Mb | ||
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| installed size is 9.3Mb | ||
| sub-directories of 1Mb or more: | ||
| doc 7.9Mb | ||
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| * win-builder (devel and release) | ||
| * There were no ERRORs, WARNINGs. | ||
| * There were no ERRORs or WARNINGs. | ||
| * There are two NOTEs. | ||
| * checking installed package size ... NOTE | ||
| installed size is 7.6Mb | ||
| sub-directories of 1Mb or more: | ||
| doc 6.8Mb | ||
| installed size is 10.5Mb | ||
| sub-directories of 1Mb or more: | ||
| doc 9.7Mb | ||
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| * checking CRAN incoming feasibility ... NOTE | ||
| Possibly mis-spelled words in DESCRIPTION: | ||
| geoms (24:40) | ||
| ggplot (5:21, 23:45) | ||
| scatterplot (25:49) | ||
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| * a couple examples take more than five seconds. But it is not user time. | ||
| ** running examples for arch 'i386' ... [43s] OK | ||
| Examples with CPU or elapsed time > 5s | ||
| user system elapsed | ||
| ggnetworkmap 3.79 0.36 5.89 | ||
| ggcorr 1.24 0.08 6.10 | ||
| ** running examples for arch 'x64' ... [41s] OK | ||
| Examples with CPU or elapsed time > 5s | ||
| user system elapsed | ||
| ggnetworkmap 3.7 0.41 5.77 | ||
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| ## Downstream dependencies | ||
| I have run R CMD check on downstream dependencies of GGally on my local machine. | ||
| * Summary - https://github.com/ggobi/ggally/blob/master/revdep/summary.md | ||
| * Check result folders - https://github.com/ggobi/ggally/blob/master/revdep/ | ||
| Maintainer: 'Barret Schloerke <[email protected]>' | ||
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| All downstream authors were not contacted as the update is minor. Only in contact with authors who requested minor update. | ||
| Possibly mis-spelled words in DESCRIPTION: | ||
| geoms (25:40) | ||
| ggplot (5:21) | ||
| scatterplot (26:49) | ||
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| * Non-GGally error | ||
| * freqparcoord (1.0.0) - Maintainer: Norm Matloff <[email protected]> | ||
| * missing package 'mgcv' is not related to the GGally package | ||
| * userfriendlyscience (0.3-0) - Maintainer: Gjalt-Jorn Peters <[email protected]> | ||
| * ggplot2 error. ggplot2::geom_dotplot doesn't know what size is. | ||
| ## Reverse dependencies | ||
| I have run R CMD check on downstream dependencies of GGally on my local machine. | ||
| * Summary - https://github.com/ggobi/ggally/blob/master/revdep/README.md | ||
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| ### Quick RevDep Table | ||
| Checked DescribeDisplay : 0 errors | 0 warnings | 0 notes | ||
| Checked eechidna : 0 errors | 0 warnings | 0 notes | ||
| Checked freqparcoord : 0 errors | 0 warnings | 0 notes | ||
| Checked ggbio : 1 error | 2 warnings | 6 notes | ||
| Checked ggmcmc : 0 errors | 0 warnings | 0 notes | ||
| Checked imageData : 0 errors | 0 warnings | 0 notes | ||
| Checked isomiRs : 1 error | 0 warnings | 0 notes | ||
| Checked LANDD : 0 errors | 0 warnings | 0 notes | ||
| Checked MissingDataGUI : 1 error | 0 warnings | 0 notes | ||
| Checked ParamHelpers : 1 error | 0 warnings | 0 notes | ||
| Checked plotly : 0 errors | 0 warnings | 0 notes | ||
| Checked PopGenReport : 0 errors | 0 warnings | 0 notes | ||
| Checked qualvar : 0 errors | 0 warnings | 0 notes | ||
| Checked robCompositions : 0 errors | 0 warnings | 0 notes | ||
| Checked robustbase : 0 errors | 0 warnings | 0 notes | ||
| Checked specmine : 1 error | 0 warnings | 0 notes | ||
| Checked svdvis : 0 errors | 0 warnings | 0 notes | ||
| Checked TCGAbiolinks : 1 error | 0 warnings | 0 notes | ||
| Checked toaster : 0 errors | 0 warnings | 0 notes | ||
| Checked userfriendlyscience: 1 error | 0 warnings | 0 notes | ||
| Checked vdmR : 0 errors | 0 warnings | 0 notes | ||
| * Failed to install dependencies for: isomiRs | ||
| * Failed to install: MissingDataGUI, specmine, TCGAbiolinks, userfriendlyscience | ||
| * ggbio: checking examples ... ERROR | ||
| * ParamHelpers: checking tests ... ERROR | ||
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| ### RevDep Notes | ||
| * Can install, but non-GGally error | ||
| * ggbio (1.20.1) - Maintainer: Michael Lawrence <[email protected]> | ||
| * Can install, but there are all sorts of issues in the check that are not related to GGally | ||
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| * Can not install | ||
| * DescribeDisplay (0.2.4) - Maintainer: Di Cook <[email protected]> | ||
| * ggplot2 error on install | ||
| * LANDD (1.0.0) - Maintainer: Shangzhao Qiu <[email protected]> | ||
| * Packages required but not available: ‘GOstats’ ‘GOSemSim’ | ||
| * isomiRs (1.0.2) - Maintainer: Lorena Pantano <[email protected]> | ||
| * Packages required but not available: ‘DiscriMiner’ ‘DESeq2’ | ||
| * MissingDataGUI (0.2-2) - Maintainer: Xiaoyue Cheng <[email protected]> | ||
| * difficulty installing RGtk2. Can't find any solutions for El Capitan / my computer | ||
| * ParamHelpers (1.7) - Maintainer: Bernd Bischl <[email protected]> | ||
| * failed unit tests. Not related to GGally | ||
| * specmine (1.0) - Maintainer: Christopher Costa <[email protected]> | ||
| * Packages required but not available: ‘xcms’ ‘MAIT’ ‘genefilter’ ‘impute’ | ||
| * Trouble installing some BioConductor deps | ||
| * TCGAbiolinks (1.2.4) - Maintainer: Antonio Colaprico <[email protected]>, | ||
| Tiago Chedraoui Silva <[email protected]> | ||
| * Trouble installing some BioConductor deps | ||
| * userfriendlyscience (0.4-1) - Maintainer: Gjalt-Jorn Peters <[email protected]> | ||
| * Can't figure out why it will not install | ||
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| * No error (Works!) | ||
| * ggmcmc (0.7.3) - Maintainer: Xavier Fernández i Marín <[email protected]> | ||
| * ParamHelpers (1.6) - Maintainer: Bernd Bischl <[email protected]> | ||
| * PopGenReport (2.2) - Maintainer: Bernd Gruber <[email protected]> | ||
| * DescribeDisplay (0.2.5) - Maintainer: Di Cook <[email protected]> | ||
| * eechidna (0.1) - Maintainer: Ben Marwick <[email protected]> | ||
| * freqparcoord (1.0.1) - Maintainer: Norm Matloff <[email protected]> | ||
| * ggmcmc (1.0) - Maintainer: Xavier Fernández i Marín <[email protected]> | ||
| * imageData (0.1-21) - Maintainer: Chris Brien <[email protected]> | ||
| * LANDD (1.0.0) - Maintainer: Shangzhao Qiu <[email protected]> | ||
| * plotly (3.6.0) - Maintainer: Carson Sievert <[email protected]> | ||
| * PopGenReport (2.2.2) - Maintainer: Bernd Gruber <[email protected]> | ||
| * qualvar (0.1.0) - Maintainer: Joel Gombin <[email protected]> | ||
| * robCompositions (1.9.1) - Maintainer: Matthias Templ <[email protected]> | ||
| * robustbase (0.92-5) - Maintainer: Martin Maechler <[email protected]> | ||
| * robCompositions (2.0.0) - Maintainer: Matthias Templ <[email protected]> | ||
| * robustbase (0.92-6) - Maintainer: Martin Maechler <[email protected]> | ||
| * svdvis (0.1) - Maintainer: Neo Christopher Chung <[email protected]> | ||
| * toaster (0.4.1) - Maintainer: Gregory Kanevsky <[email protected]> | ||
| * vdmR (0.2.0) - Maintainer: Tomokazu Fujino <[email protected]> | ||
| * toaster (0.5.1) - Maintainer: Gregory Kanevsky <[email protected]> | ||
| * vdmR (0.2.2) - Maintainer: Tomokazu Fujino <[email protected]> |