Python package

Upgrade and broaden flake8, fixing style problems and bugs #1019

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Run time

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Job	Run time
build (3.7)	2m 42s
build (3.8)	2m 25s
build (3.9)	3m 8s
build (3.10)	2m 50s
build (3.11)	2m 28s
build (3.12)	2m 59s
	16m 32s