Chore Bumping all the dev dependencies to latest versions

[leszekhanusz]

Bumping dev dependencies:

• black==25.1.0
• flake8==7.1.2
• isort==6.0.1
• mypy==1.15
• sphinx-argparse==0.5.2

Also fixing docs.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 100.00%. Comparing base (7fb869a) to head (bf3e4f3).
Report is 5 commits behind head on master.

Additional details and impacted files

@@            Coverage Diff            @@
##            master      #540   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           38        38           
  Lines         2908      2845   -63     
=========================================
- Hits          2908      2845   -63     

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