add @jjc2718 suggestions

Co-authored-by: Jake Crawford <[email protected]>
greenelab · Aug 13, 2021 · d0f9542 · d0f9542
1 parent af68d8c
commit d0f9542
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Showing 3 changed files with 2 additions and 5 deletions.
diff --git a/libs/clustermatch/log_config.yaml b/libs/clustermatch/log_config.yaml
@@ -17,7 +17,6 @@ handlers:
     class: logging.FileHandler
     level: DEBUG
     filename: logging.txt
-#    mode: w
     formatter: simple
     delay: true
 
@@ -26,9 +25,6 @@ loggers:
     handlers: [empty]
     propagate: false
 
-#  setup:
-#    handlers: []
-
 root:
   handlers: [console]
   level: INFO
diff --git a/scripts/run_nbs_server.sh b/scripts/run_nbs_server.sh
@@ -12,7 +12,7 @@ PORT=8893
 export PYTHONPATH=`pwd`/libs/
 echo "PYTHONPATH=${PYTHONPATH}"
 
-# export the PhenoPLIER configuration as environmental variables (this is
+# export the configuration as environmental variables (this is
 # helpful if the configuration is needed outside python)
 eval `python libs/clustermatch/conf.py`
 

diff --git a/tests/test_conf.py b/tests/test_conf.py
@@ -38,6 +38,7 @@ def test_conf_entries():
     assert conf.RESULTS["BASE_DIR"] != ""
 
     assert conf.MANUSCRIPT is not None
+    assert "CONTENT_DIR" not in conf.MANUSCRIPT
 
 
 def test_conf_main():